EY665759

Overview
NameEY665759
Unique NameEY665759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665759_ssr674 microsatellite EY665759_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665759 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.032e-24
Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = 3 
Query:  114 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFL 518
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAF+
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFI 136
The following BLAST results are available for this feature:
BLAST of EY665759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.032e-2442.34Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665759 ID=EY665759; Name=EY665759; organism=Citrus sinensis; type=EST; length=902bp
CTTTGAACTTTCCAGTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTTT
CTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAAT
TTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTC
CAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACA
TCGACGGCACTGGTCGACCGTTTCCTCCAGACCAACTCGTCTGCTGTGTC
CGTACAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAGT
CTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTTGCTTG
TTTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACT
AGCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTC
TGCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGT
GGGTACTTTGCCTTCCTTTGTCTACGACAAGTCCCACCTCCACCCTGGTT
TTGTGGGTTCTGACCAATTTTGGTAAGGTTCCCTCTTTATTTGGGGAAAT
CACTGCTGATGGGAAATTGGTTGGCCTTTTGGTGAATGATGTTGACTTGT
CCAAAGGGGGTTGGGGGCAAGTCCTTTCTTTCTTTCCCCTCAGGGTTGGT
TCTTCCTCACACGGTGCTGGAAAGAACGGAAAATGTTTTTGAAAATCCCG
TAGAAAAAGAGACTCTGGCGCGGTTCTCGTTGGGGCAAAAAAAACATTGG
GGGGGGCCTACCTTTTACTGGGGTGACGCGGGCCTCAACATTTCTTCACC
CACACCAGAATAAAACAAGCATAAGAAAAGATTTTTTTTTTACCCCACCT
GG
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