CX674975

Overview
NameCX674975
Unique NameCX674975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:158..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = -3
Query:  183 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557
            MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR           GS L Y SA+++GD+
Sbjct:    1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.899e-46
Identity = 94/126 (74.60%), Postives = 103/126 (81.75%), Query Frame = -3
Query:  183 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557
            MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR           GS L Y SA ++GD+
Sbjct:    1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.760e-45
Identity = 92/126 (73.02%), Postives = 104/126 (82.54%), Query Frame = -3
Query:  183 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557
            MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR           GS L Y SAT++G++
Sbjct:    1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.541e-44
Identity = 88/125 (70.40%), Postives = 100/125 (80.00%), Query Frame = -3
Query:  183 MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557
            MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR           GS L Y SA A  D+
Sbjct:    1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36
Identity = 83/126 (65.87%), Postives = 96/126 (76.19%), Query Frame = -3
Query:  183 MASLATIAAVQPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557
            MASLA ++ V+P  IKGL GSS++G KL V +P+ +S R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR           GS LAY SA+AS D+
Sbjct:    1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = -3
Query:  183 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 548
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR           GS +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = -3
Query:  183 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 548
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR           GS +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.678e-35
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = -3
Query:  183 LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 548
            +A++ AVQPA +KGL GSS++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR           GS +AY SA+AS D+
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124          
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  303 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 410
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of CX674975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA2.079e-4674.60Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH7.899e-4674.60Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH1.760e-4573.02Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL2.541e-4470.40Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE1.950e-3665.87Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ9.678e-3661.42Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI9.678e-3661.42Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU3.678e-3560.48Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA7.972e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_9G12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9G12-M23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674975 ID=CX674975; Name=CX674975; organism=Citrus sinensis; type=EST; length=604bp
CAAATATATTGGCATTAATAACAAAGGAAGTCTTAAGTAGGATGTTGGAC
AAACCTACAGGTTTACAATAACAAGAAGATACATACAATGAAAAGTTAAA
AATATGAGGATTGAAAACTAATTTAGATCTTGCCACGTGGTCCGAGCTTT
GGTGGAAGTTGAGGGCCCTTCTTGATTGGGAGAATGTCACCACTAGCTGT
AGCACTGAAGTAAGCAAGGGTTGAACCTCCTCCCAATATCAAGAACTTGA
GCAATAATCCTCTCTTGGTGAATGGAGCCGCAAATGTCTCAAAGAACTTG
CTCTGAAGAGAGTTGTACGGTGAAGGAGCATCTGATCCGTACAAGTCCCA
CTGGCCCGTAGTGTTGCCCAAATCCTCCAAATCAAAGTACACACTCTTAT
CACCATACTTAGCCACAACAGCACCAGCCTTGAAGCTTTTGGGTCTGAAA
CTCTGGCGAGTTGGCTTGACGGTGAGCTTAGTTCCAGCAAGAGAGCTGCC
TCCAAGGCCTTTGATGGTGGCTGGTTGCACAGCAGCTATGGTTGCAAGAG
ATGCCATGGCCTTGGTTTGTTGTAAATTCTTGACTTGCTTACTTGAAGCT
GCCT
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