CX674975
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46 Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = -3 Query: 183 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557 MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR GS L Y SA+++GD+ Sbjct: 1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 7.899e-46 Identity = 94/126 (74.60%), Postives = 103/126 (81.75%), Query Frame = -3 Query: 183 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557 MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR GS L Y SA ++GD+ Sbjct: 1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.760e-45 Identity = 92/126 (73.02%), Postives = 104/126 (82.54%), Query Frame = -3 Query: 183 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557 MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR GS L Y SAT++G++ Sbjct: 1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.541e-44 Identity = 88/125 (70.40%), Postives = 100/125 (80.00%), Query Frame = -3 Query: 183 MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557 MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+ + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR GS L Y SA A D+ Sbjct: 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36 Identity = 83/126 (65.87%), Postives = 96/126 (76.19%), Query Frame = -3 Query: 183 MASLATIAAVQPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 557 MASLA ++ V+P IKGL GSS++G KL V +P+ +S R +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR GS LAY SA+AS D+ Sbjct: 1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36 Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = -3 Query: 183 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 548 +A++ AVQP +KGL GSS++G KL V+P+ R + RP++ AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR GS +AY SA+AS D+ Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36 Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = -3 Query: 183 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 548 +A++ AVQP +KGL GSS++G KL V+P+ R + RP++ AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR GS +AY SA+AS D+ Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.678e-35 Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = -3 Query: 183 LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXGSTLAYFSATASGDI 548 +A++ AVQPA +KGL GSS++G KL V+P+ + + +A AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR GS +AY SA+AS D+ Sbjct: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124
BLAST of CX674975 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3 Query: 303 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 410 KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36 The following BLAST results are available for this feature:
BLAST of CX674975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX674975 ID=CX674975; Name=CX674975; organism=Citrus sinensis; type=EST; length=604bpback to top |