CX674974

Overview
NameCX674974
Unique NameCX674974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674974_ssr223 microsatellite CX674974_ssr223:223..232. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5607 contig Csv1_Contig5607:21..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.310e-64
Identity = 123/159 (77.36%), Postives = 142/159 (89.31%), Query Frame = -1
Query:  339 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTAXXXXXXXXXRQFVDPAST 815
            QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LEDALK+EQKAPPGTA         ++FV+ AS+
Sbjct:  395 QKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPPGTARRKRKADSRKKFVESASS 553          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.379e-26
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -1
Query:  462 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL-MGVMEGG 815
            Q KI+ A FDF+DF+KQ R +  MGS+  ++ MIPGM K++   + + EK LK  EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E  VS+L+    +MR  M+ + MG M GG
Sbjct:  319 QNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRTMMQQMGMGGMPGG 437          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.767e-25
Identity = 58/127 (45.67%), Postives = 84/127 (66.14%), Query Frame = -1
Query:  438 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNL 815
            Q+KI++A FDF DFLKQ R +  MGS++  I +IPG+G KI   Q+R+ E+ LK +EAMI +MTP+ER  P+LL+ SP RR R+A+  G+TE ++ Q++ Q  QMR  M+     M  G  P +  +
Sbjct:  319 QEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQFQQMRTMMQQ----MSQGGFPGMGGM 441          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  465 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 812
            +K+   +FDFNDF++Q   V  MGSM  ++ MIPGM      A V+  E  +    A++ +MTPEERE P+LL  +P RR+R+A  SG T   V++ +    Q +   K + GVM G
Sbjct:  322 EKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPALANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAK---KMMQGVMSG 433          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = -1
Query:  417 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 809
            KI++      DFL+Q   V +MG +  ++GM+PG G++     +  +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +P +       KS+
Sbjct:  328 KIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLG---GMGIPGMGRKSATRKSK 453          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = -1
Query:  402 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA---QLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPP 812
            KK+    F FNDFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +ERE PE+L  S  RRKR+A  SG    ++++++    Q  +M  R+ N  G+ +      L NL    K++   PP
Sbjct:  313 KKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGISD------LMNLMSQAKNQ--TPP 445          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 52/143 (36.36%), Postives = 82/143 (57.34%), Query Frame = -1
Query:  402 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA---QLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPP 812
            KK+    F FNDFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +E+E PE+L  S  RRKR+A  SG    ++++++    Q  +M  R+ N  G+ +      L NL    K++   PP
Sbjct:  313 KKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGISD------LMNLMSQAKNQ--TPP 445          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = -1
Query:  417 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 809
            KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +P +       KS+
Sbjct:  328 KIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIPGIGRKSATRKSK 453          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = -1
Query:  417 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 809
            KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +P +       KS+
Sbjct:  328 KIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIPGIGRKSATRKSK 453          
BLAST of CX674974 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 43/112 (38.39%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  483 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 809
            K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MTP+ER+ P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK +
Sbjct:  323 KLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431          
The following BLAST results are available for this feature:
BLAST of CX674974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SR54C_ARATH1.310e-6477.36Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNY35.379e-2649.58Signal recognition particle protein OS=Synechocyst... [more]
SRP54_SYNE77.767e-2545.67Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_STRMU1.243e-1440.17Signal recognition particle protein OS=Streptococc... [more]
SRP54_MYCLE1.243e-1433.59Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_HELPJ1.243e-1437.06Signal recognition particle protein OS=Helicobacte... [more]
SRP54_HELPY3.616e-1436.36Signal recognition particle protein OS=Helicobacte... [more]
SRP54_MYCTU4.723e-1433.59Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO4.723e-1433.59Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_RICCN1.052e-1338.39Signal recognition particle protein OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9G11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9G11-M21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674974 ID=CX674974; Name=CX674974; organism=Citrus sinensis; type=EST; length=815bp
TTTGAATCTAATGTGTTCATATTGCTCTTCATACAACGCATTTCATTCTA
GCTTTCATTTTCAATTTCACAAGTCAATGCAAGTGACATTGGTTAACATA
CATAAAAGTACAGTACTTAAAAGACACAAGGTGGCAATTCCGTGCTCGGT
TACATTAATTGATGAATTCTTACAGCTCAAACAACCTTGAAAACTCTTTT
AACTTCATGAGTAGAGATATCTGAGAGAGAGAAAGAATTTACGATTCCTT
TACTGTTTGCCTGGAGGCCAGTATGTTGTTTGCAGCTGACAAAACTTAAG
ATCTAGCTCCCACCCCCAAAACCACGAGGACTTGGCCTTGTTGATGCCGG
GTCAACGAACTGCCTCCTTGATTCTGATCTTCTCTTCCTCCTTGCGGTAC
CAGGAGGAGCCTTCTGTTCAGATTTAAGGGCATCCTCAAGATTGCTCAGT
GCAGGAAGTGAACCACCTTCCATTACACCCATTAAGTTCTTCATACGCAC
ACGCATTTGGAAGAGTTGAGCAACAAGTTGGCTCACCTGCTGTTCTGTTT
TCCCAGAATCTTGAGCAACTCTTTTTCTTCTGACAGGAGATTCAGCCAAC
AGTTCTGGTTTCTCCCTTTCCTCAGGCGTCATTGCTTCGATCATTGCTTC
CATTATTTTTAAACTCTTCTCTGCTTCTCGAACTTGTGCAGGAGTAATCT
TCCCCATTCCAGGGATCATTCCTATAACACGACTCATCGAACCCATACGT
GCAACAGTACGGGTTTGCTTTAAGAAATCATTGAAGTCAAAATTCGCACT
CATTATCTTCTTTTG
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