CX674973

Overview
NameCX674973
Unique NameCX674973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5462 contig Csv1_Contig5462:1..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.693e-86
Identity = 178/253 (70.36%), Postives = 195/253 (77.08%), Query Frame = 2
Query:   29 MEAVQFSTVASRHYSATGKTFYNSRISAGKSTKFVSSWAASSDPTRLSSTSRNLFTRETWGLIDSKSXXXXXXXXXXXXXXAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTEVKPSQI 787
            MEA+QFS+V       T     N RI A  S+ F      S+      S+SRNL TRE W  + SK+              AEMFGQLT GLEAAW+KLKGEE LTK+NI EPMRDIRRALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAIDQLVILGEQVGVPVY AGT+VKP+ I
Sbjct:    1 MEALQFSSV--NRVPCTLSCTGNRRIKAAFSSAFTGGTINSAS----LSSSRNLSTREIWSWVKSKTVVGHGRYRRSQVR-AEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADI 246          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.209e-47
Identity = 92/170 (54.12%), Postives = 127/170 (74.71%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTEVKPSQI 787
            MF  L   LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+  V E+AVG  +I G+RPDQQ +K+V DELV++MG     L  A   PTVIL+AGLQG GKTT +AKLA +L+K+G+S +LVA DVYRPAAIDQL+ LG+Q+ VPV+  G++  P +I
Sbjct:    1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEI 170          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.853e-44
Identity = 91/170 (53.53%), Postives = 123/170 (72.35%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTEVKPSQI 787
            MF  L   LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V ++A+G  +I GV P QQ +KIV DELV LMG     L  A+  PTVIL+AGLQG GKTT +AKLA YL+KQ +S ++VA DVYRPAAIDQL  LG+Q+ VPV+  G++  P +I
Sbjct:    1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEI 170          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.997e-39
Identity = 83/170 (48.82%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  281 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTEVKPSQI 787
            F  L   L+   +K++G+  ++++++ E MR++R ALLEADV+  VV+ FV+ VSE+AVG  +++ + P QQ++K+V++EL +LMGGE S++  AK  PTVI++ GLQG GKTT S KLAN L KK  +  MLVA D+YRPAAI QL  LG+Q+ +PV+  G +V P +I
Sbjct:    3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEI 172          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 754
            MF  L+  L AA   L+G+  LT  +I    R+IR ALLEADVSLPVVR F+  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+
Sbjct:    1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 754
            MF  L+  L AA   L+G+  LT  +I    R+IR ALLEADVSLPVVR F+  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+
Sbjct:    1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.089e-36
Identity = 80/159 (50.31%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 754
            MF  L++ L      L+G+  LT  +I    R+IR AL EADVSLPVVR FV  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  +L FAK+ PTV++LAGLQG GKTT++ KLA  L++QG + +LVA D+ RPAA++QL ++GE+ GVPV+
Sbjct:    1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.204e-35
Identity = 75/164 (45.73%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  281 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTE 769
            F  LT  L+  +  L+G+  L+++++ E  ++IR ALLEADV+LPVV+ F++ V ++AVG  +I  + P QQ++KIV +EL  ++G E +E+  +   PT+I++ GLQG GKTT + KLAN L K++    +++A D+YRPAAIDQL  LG+Q+ VPV+  GTE
Sbjct:    3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTE 166          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.965e-34
Identity = 81/171 (47.37%), Postives = 106/171 (61.99%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTEVKPSQI 787
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI QL  L EQVGV  + +    KP  I
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDI 171          
BLAST of CX674973 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.965e-34
Identity = 81/171 (47.37%), Postives = 106/171 (61.99%), Query Frame = 2
Query:  278 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAGTEVKPSQI 787
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI QL  L EQVGV  + +    KP  I
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDI 171          
The following BLAST results are available for this feature:
BLAST of CX674973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
SR54C_ARATH5.693e-8670.36Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNE75.209e-4754.12Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_SYNY31.853e-4453.53Signal recognition particle protein OS=Synechocyst... [more]
SRP54_BACSU3.997e-3948.82Signal recognition particle protein OS=Bacillus su... [more]
SRP54_MYCTU5.772e-3852.20Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO5.772e-3852.20Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCLE1.089e-3650.31Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_STRMU1.204e-3545.73Signal recognition particle protein OS=Streptococc... [more]
SRP54_ECOLI2.965e-3447.37Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECOL62.965e-3447.37Signal recognition particle protein OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9G11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9G11-M21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674973 ID=CX674973; Name=CX674973; organism=Citrus sinensis; type=EST; length=788bp
TCAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGA
CCGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCC
AGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTC
CAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAG
AGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGT
AGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGG
CCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGG
AGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCA
GATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACA
AGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGG
TCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCT
GAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCT
ACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTA
AGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCT
GCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTGCCAGT
TTATATAGCAGGGACTGAGGTTAAACCATCACAAATAG
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