EL492562

Overview
NameEL492562
Unique NameEL492562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.716e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI
Sbjct:   69 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 107          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.716e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI
Sbjct:   69 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 107          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.636e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEI
Sbjct:   70 IRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.636e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEI
Sbjct:   70 IRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.662e-13
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEI
Sbjct:   66 IRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEI 104          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+
Sbjct:   69 IRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEV 107          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEI 108          
The following BLAST results are available for this feature:
BLAST of EL492562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS16_LUPPO8.716e-15100.0040S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_GOSHI8.716e-15100.0040S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS163_ARATH9.636e-1492.3140S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS161_ARATH9.636e-1492.3140S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS16_TORRU3.662e-1392.3140S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_FRIAG1.391e-1287.1840S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_RAT2.373e-1284.6240S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG2.373e-1284.6240S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]
RS16_MOUSE2.373e-1284.6240S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN2.373e-1284.6240S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]

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Properties
Property NameValue
Genbank descriptionC3212 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3212, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492562 ID=EL492562; Name=EL492562; organism=Citrus sinensis; type=EST; length=255bp
GACTGCGTAGTGATCCGTGTGAAAGGTGGAGGTCACACGTCACAAATCTA
TGCAATTCGTCAGTCAATAGCGAAAGCACTTGTTGCATTTTACCAGAAGT
ATGTTGATGAGCAGTCGAAGAAGGAGATCTGAAAATGGTGGCAGCTACCA
TGATACACAACTACAATATTCAATTAGTGGAAGCACAAACAATTTCACCA
ACAGCTACTGTTGTGATTCGAATGACAAATGGTTTGATGGTTACTCAGGA
CTCAT
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