EL492558

Overview
NameEL492558
Unique NameEL492558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length222
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12086 contig Csv1_Contig12086:186..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.416e-18
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            FHRPK +++ R  P   RISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF
Sbjct:   44 FHRPKTLKKDRN-PKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 96
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.344e-15
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            FHRPK +   R  P   +ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVF
Sbjct:   44 FHRPKTLTVPRK-PKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 96
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.292e-15
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            FHRP+ + + R  P   RISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVF
Sbjct:   44 FHRPRTLTKDRN-PKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVF 96
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.106e-15
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            FHRPK +++ R  P   RISAP RNKLD Y ILKYPLTTESAMKKIEDNNTLVF
Sbjct:   44 FHRPKTLKKDRN-PKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVF 96
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.106e-15
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            FHRPK + + R      +ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVF
Sbjct:   44 FHRPKTLTKPR-TGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 96
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            F RPK +   R  P   R SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVF
Sbjct:   46 FRRPKTLRLRRQ-PKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVF 98
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            F RPK +   R  P   R SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVF
Sbjct:   46 FRRPKTLRLRRQ-PKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVF 98
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            F RPK +   R  P   R SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVF
Sbjct:   46 FRRPKTLRLRRQ-PKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVF 98
[Close]
BLAST of EL492558 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 FHRPKHIEEGRGIPSTLRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVF 162
            F RPK +   R  P   R SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVF
Sbjct:   46 FRRPKTLRLRRQ-PKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVF 98
The following BLAST results are available for this feature:
BLAST of EL492558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RL23A_FRIAG8.416e-1881.4860S ribosomal protein L23A OS=Fritillaria agrestis... [more]
R23A2_ARATH1.344e-1577.7860S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
RL23A_DAUCA2.292e-1575.9360S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
RL23A_TOBAC5.106e-1575.9360S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
R23A1_ARATH5.106e-1575.9360S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_RAT1.065e-1270.3760S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE1.065e-1270.3760S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN1.065e-1270.3760S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN1.065e-1270.3760S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
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Properties
Property NameValue
Genbank descriptionC3170 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3170, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492558 ID=EL492558; Name=EL492558; organism=Citrus sinensis; type=EST; length=222bp
TTTCACCGTCCAAAGCACATTGAAGAAGGACGCGGAATCCCAAGTACCCT
GCGCATCAGTGCTCCACCTAGGAACAAGCTTGACCATTATCAGATTCTCA
AGTACCCACTCACCACTGAATCAGCAATGAAGAAAATTGAAGACAACAAT
ACTCTGGTTTTCATTGTTGACATACGGGCTGATAAGAAAAAGATAAAGGA
TGCAGTTACTCAGGACTTCATC
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