EY665748

Overview
NameEY665748
Unique NameEY665748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:511..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.507e-46
Identity = 90/114 (78.95%), Postives = 103/114 (90.35%), Query Frame = 1
Query:   28 HLIVREDDVVAFLETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 369
            HLI++EDD+V  LET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIGTVIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:  140 HLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          

HSP 2 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   31 LIVREDDVVAFLETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 366
            L+V+   VVA     +   +KPL DRV +K+ EAEE T GG+LL   ++ KP  G V+AVG G    + N+  +++  G  ++YSKYAG + + +D   ++ L+  +++ +L
Sbjct:   47 LVVKAASVVA----PKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGK-NKIDITVPTGAQIIYSKYAGTEVEFND-VKHLILKEDDIVGIL 152          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.360e-44
Identity = 84/121 (69.42%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    7 VGVPFSNHLIVREDDVVAFLETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 369
            + V  S+HLIV+EDD++  LETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS GTV+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:  135 IEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          

HSP 2 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 39/113 (34.51%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   31 LIVREDDVVAFLETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 366
            L+VR     A + T +   +KPL DRV IK    EE T  G+ L  A+++KP  G V+A+G G   + G++K P+++  G  V+YSKY G + +  DG++++ ++  +++ +L
Sbjct:   49 LVVR----AASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSG--KKVGDKKLPVAVKTGAEVVYSKYTGTEIE-VDGSSHLIVKEDDIIGIL 154          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 366
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 366
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_PROM5 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9515) GN=groS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.191e-21
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 369
            +  +KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.862e-21
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 369
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.738e-21
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 369
            +  LKPL DRVF+KV+E+EE TAGG+LL +++KEKP IG V+AVG G  +++G+R  + +  G+ V+YSKYAG D K S G +Y+ L   +++A ++
Sbjct:    8 VSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLS-GDDYVLLSEKDILATVA 103          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.738e-21
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 369
            +  +KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G  ++ L   +++A +S
Sbjct:    8 VTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIK-LGGEEFVLLSEKDILAAVS 103          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.738e-21
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 360
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP +G V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILA 100          
BLAST of EY665748 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.882e-21
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   79 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 369
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
The following BLAST results are available for this feature:
BLAST of EY665748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH1.507e-4678.9520 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL5.360e-4469.4220 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_THEVL7.532e-2247.9210 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB7.532e-2247.9210 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_PROM52.191e-2148.4510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_SYNPW2.862e-2148.9810 kDa chaperonin OS=Synechococcus sp. (strain WH7... [more]
CH10_SYNP23.738e-2148.4510 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_MICAN3.738e-2147.4210 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_CYAP73.738e-2147.8710 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_PROMS4.882e-2148.4510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665748 ID=EY665748; Name=EY665748; organism=Citrus sinensis; type=EST; length=521bp
GACTGAGTTGGAGTTCCCTTTTCAAATCATCTCATAGTGAGGGAGGATGA
CGTAGTTGCCTTTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTA
ATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGA
GGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGT
CATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTC
TATCCATTGCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAAT
GACTTCAAGGGCAGTGATGGTACCAACTACATTGCTTTAAGAGCTTCTGA
AGTGATGGCTGTGCTCTCTTAGTTGTCTGTGTTTACTTGAGCGAGGCTTT
ATATGTATTAGTGAATTGAATTTTATGGTTGAGTTGCCTCAAGGCATACG
GATTTTGACTGTAATCTTATTTGAAAATAAAGAATTGCAGCTTGATCAAA
AAAAAAAAAAAAAAAAAAAAG
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