EL492553

Overview
NameEL492553
Unique NameEL492553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13022 contig Csv1_Contig13022:624..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492553 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 2.031e-11
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = -2 
Query:  131 EDIWCGMCVKVICDHLSIGVKTGLPYVFRSDKGTSDRELEK 253
            +D+W G CVKVICDHLS+GVKTGLPY++ S        L+K
Sbjct:  245 DDMWAGWCVKVICDHLSLGVKTGLPYIWHSKASNPFVNLKK 285

HSP 2 Score: 30.4166 bits (67), Expect = 2.031e-11
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = -1 
Query:   33 KRNGKG*TKMEEIIPFFQSVRLPRTXDLLTVAHC 134
            K+  KG    E+IIPFFQ+V +P+  D  TV  C
Sbjct:  284 KKEYKGIFWQEDIIPFFQNVTIPKDCD--TVQKC 315
The following BLAST results are available for this feature:
BLAST of EL492553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPTG_MAIZE2.031e-1158.54Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC3090 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3090, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492553 ID=EL492553; Name=EL492553; organism=Citrus sinensis; type=EST; length=269bp
ACCTTCACTGTATTTCNCCATACTCAAGGCAAACAATGCGCTACAGTCAG
TAGATCACNTGTCCGNGGCAACCTTACTGACTGAAAGAAAGGTATTATTT
CCTCCATCTTTGTTCACCCCTTCCCATTCCTTTTTCAAGCTCTCTATCGG
ATGTACCCTTGTCACTCCTAAACACATAAGGTAGCCCGGTTTTCACACCA
ATACTCAAGTGGTCGCATATAACCTTGACACACATCCCACACCAGATATC
TTCAATTGTTTCCCACCTC
back to top