CN186285

Overview
NameCN186285
Unique NameCN186285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 91/260 (35.00%), Postives = 125/260 (48.08%), Query Frame = 2
Query:    5 FAIGDGSVL-GRVPFSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQVNLNSES-QLQLXXXXXXXXXXXXXVAPLLDIGMFSGAGAPXXXXXXXQKEWSLEENSKQQT--REVSGEVIKKEQLAAGFXXXXXXXXXXXXXXHFVSGFTDI--NVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            ++ G+GS L G+   S + V +TG   +    C+R K+    G+QT++C+ +  GV+EL S++ I+ +  L    + LFG   +   +   N NSE    QL                          G P       Q  ++L  ++   T  R   G+V+   +                   + V   T +      KKRGRKP  GR+ PLNHVEAER RRE+LNHRFYALR+VVPNVSKMDK SLL DAV YI E
Sbjct:  147 WSFGNGSGLAGKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFLFGG--SKYFSGAPNSNSELFPFQLESSCSSTV-----------------TGNPNPSPVYLQNRYNLNFSTSSSTLARAPCGDVLSFGENVKQSFENRNPNTYSDQIQNVVPHATVMLEKKKGKKRGRKPAHGRDKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINE 387          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 2
Query:  587 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            +KRGRKP +GRE PLNHVEAERQRRE+LN RFYALRSVVPN+SKMDKASLL DA++YIKE
Sbjct:  380 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKE 439          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:  587 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            KKRGRKP +GRE PLNHVEAERQRRE+LN RFYALR+VVPNVSKMDKASLL DA+AYI E
Sbjct:  437 KKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINE 496          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:  587 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            +KRGRKP +GRE PLNHVEAERQRRE+LN RFY+LR+VVPNVSKMDKASLL DA++YI E
Sbjct:  401 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISE 460          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:  587 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            +KRGRKP +GRE PLNHVEAERQRRE+LN RFY+LR+VVPNVSKMDKASLL DA++YI E
Sbjct:  400 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINE 459          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 2
Query:  587 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            +KRGRKP +GRE  LNHVEAERQRRE+LN RFYALR+VVPN+SKMDKASLLADA+ YI +
Sbjct:  305 RKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITD 364          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  575 NVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKE 766
            N   +KRGR+P +GR   LNHVEAERQRRE+LN RFYALRSVVPN+SKMDKASLL DAV+YI E
Sbjct:  414 NNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINE 477          
BLAST of CN186285 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.550e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 2
Query:  629 LNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIK 763
            L+HVEAE+QRRE+LNHRFYALR++VP VS+MDKASLL+DAV+YI+
Sbjct:  248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIE 292          
The following BLAST results are available for this feature:
BLAST of CN186285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BH028_ARATH6.376e-2635.00Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
AIB_ARATH8.618e-2383.33Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
RAP1_ARATH1.126e-2285.00Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH1.244e-2180.00Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH1.244e-2180.00Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH003_ARATH8.066e-2178.33Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
BH013_ARATH1.797e-2075.00Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH014_ARATH9.550e-1477.78Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186285 ID=CN186285; Name=CN186285; organism=Citrus sinensis; type=EST; length=766bp
GTTCTTTGCAATTGGTGATGGTAGTGTTCTTGGTAGGGTGCCCTTCTCTG
GTGATTATGTGTGGCTAACTGGTGACCATGAGCTCCAACTGTACGAGTGT
GAAAGAGTTAAAGAAGCTCGTATGCATGGGATTCAGACTTTGGTCTGCGT
TTCAACTGCTTGTGGAGTTGTTGAATTGGGCTCTTCAGATTTGATCAAAG
AAGATTGGAGCTTGGTGCAATTAGCCAAATCTCTCTTCGGCCCTGTCATT
GCTACTATGCTCACAAAGCAAGTCAATCTTAATTCTGAGAGCCAACTTCA
ACTTCCCAATCCCACGACCAGAAATAATAATAATACTAATAATGTTGCTC
CTCTGCTAGACATTGGAATGTTCTCAGGTGCAGGCGCCCCCCACCACCAC
CACCACCATCATCAAAAAGAGTGGTCCCTTGAAGAGAATTCGAAGCAGCA
GACCCGAGAAGTATCCGGCGAAGTAATTAAGAAAGAACAACTAGCTGCTG
GTTTTGGCCGTTCATCTTCAGATTCGGGGCCTTCTGACTCAGACGGTCAC
TTCGTTTCAGGATTTACTGACATTAATGTTACATCCAAAAAACGAGGAAG
AAAGCCAACAAGCGGAAGAGAGTCTCCTCTCAACCACGTGGAAGCAGAGA
GGCAGCGCCGTGAGAGGCTTAATCATCGCTTCTATGCTCTCCGCTCTGTG
GTTCCAAACGTTTCCAAAATGGACAAAGCTTCTTTACTCGCTGATGCTGT
TGCCTACATCAAAGAG
back to top