CN186279

Overview
NameCN186279
Unique NameCN186279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.895e-42
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = -1
Query:  165 QEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 440
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.075e-40
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = -1
Query:  168 EEDKKPVDQS---AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 437
            EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.305e-23
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -1
Query:  174 EEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 437
            ++D KP   + HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:   26 QQDVKP--STEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.498e-19
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  159 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALGSG 440
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+   G
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASRG 97          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  174 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 440
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  174 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 440
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  159 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA------LGSG 440
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+      LGSG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSG 103          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  174 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 431
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  174 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 431
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  174 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 431
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
The following BLAST results are available for this feature:
BLAST of CN186279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH2.895e-4290.22Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ2.075e-4088.17Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO2.305e-2357.95Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_MOUSE4.498e-1950.53Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_XENTR5.875e-1953.33Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA5.875e-1953.33Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_BOVIN5.875e-1950.50Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SUMO2_RAT1.309e-1851.65Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG1.309e-1851.65Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE1.309e-1851.65Small ubiquitin-related modifier 2 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186279 ID=CN186279; Name=CN186279; organism=Citrus sinensis; type=EST; length=518bp
TTTTTTTTTTTTTTTGATAATAAACCATGACTTAAATTCAAGTTAACTAT
AAGATCCAAGTCATCATTTACAGTAATATTTCCATAGATATAGGCTAATT
TAAAAAACTCAAACATCAAGTCCGCCAGCGATGCTCTAAATATTTCACAC
TGCAGTTAACCGCTTCCAAGCGCACCTCCAGTCTGATGCAGCATTGCATC
AATTTCATCTCCATCCTCCATCTCAAGCTCATCTGGAGTCTGCTCTCCTC
GGAGTCTCCGCCCATCAAACAAGAAAGCAATAGAGTTTAACTCCACCGAC
TGCCGATCACAGTAGGCATTCATGAGCTTTTTCAACTGGGTGCTTCGCTT
AATTCTAAAAAACACCTCATTGCCATCCTGGCCCTTGACTTTGAGGTTAA
TGTGCGCCGACTGATCGACGGGCTTCTTGTCCTCCTCCTGACCACCGCCG
CCGCCGCCGCCACCACCAGTTGCTGACATCCTTACAGGTTGTTAGAATTG
AATTTTACCCTCTCTCCT
back to top