EL492548

Overview
NameEL492548
Unique NameEL492548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length191
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.299e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN RATSESETLYCVYVA+GQKRSTVAQLVQILSEGNALEYSILVAATASD
Sbjct:  186 LNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEGNALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.134e-21
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN RATSESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.134e-21
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN RATSESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.134e-21
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN RATSESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.753e-21
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK++N RATSESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQLNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN R+TSESETLYCVYVA+GQKRSTVAQLVQILSE NA+EYSILVAATASD
Sbjct:  186 LNQKQMNSRSTSESETLYCVYVAIGQKRSTVAQLVQILSEANAMEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK++N +ATSESETLYCVYVAVGQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQLNSKATSESETLYCVYVAVGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_WHEAT (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum GN=ATPA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN R T+ESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN R T+ESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK+MN R T+ESETLYCVYVA+GQKRSTVAQLVQILSE NALEYSILVAATASD
Sbjct:  186 LNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASD 241          
The following BLAST results are available for this feature:
BLAST of EL492548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
ATPAM_OENBI4.299e-2292.86ATP synthase subunit alpha, mitochondrial OS=Oenot... [more]
ATPAM_SOYBN2.134e-2191.07ATP synthase subunit alpha, mitochondrial OS=Glyci... [more]
ATPAM_PHAVU2.134e-2191.07ATP synthase subunit alpha, mitochondrial OS=Phase... [more]
ATPAM_PEA2.134e-2191.07ATP synthase subunit alpha, mitochondrial OS=Pisum... [more]
ATPAM_NICPL4.753e-2189.29ATP synthase subunit alpha, mitochondrial OS=Nicot... [more]
ATPAM_HELAN8.108e-2187.50ATP synthase subunit alpha, mitochondrial OS=Helia... [more]
ATPAM_BETVU8.108e-2189.29ATP synthase subunit alpha, mitochondrial OS=Beta ... [more]
ATPAM_WHEAT1.383e-2087.50ATP synthase subunit alpha, mitochondrial OS=Triti... [more]
ATPAM_ORYSJ1.383e-2087.50ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSI1.383e-2087.50ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC2931 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2931, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492548 ID=EL492548; Name=EL492548; organism=Citrus sinensis; type=EST; length=191bp
GACTGCGTAGTGATCCGAGGCGGTGGCTGCTACAAGAATGGAATATTCCA
AAGCATTCCCTTCTGAAAGAATTTGAACTAATTGTGCTACAGTTGAGCGT
TTTTGTCCAACCGCTACATAGACACAATACAATGTCTCACTCTCAGAGGT
GGCCCTTGGGTTCATTTCCTTTTGGTTTACTCAGGACTCAT
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