EL492546

Overview
NameEL492546
Unique NameEL492546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length251
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:690..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK*NS 143
            SVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+AE+K N+
Sbjct:  212 SVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRNA 254          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SV GANCKELAA+PDVDGFLVGGASLKPEFIDII SA +K
Sbjct:  212 SVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.912e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSA +K
Sbjct:  212 SVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVK 251          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:  212 SVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVK 251          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:  212 SVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:  212 SVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.007e-12
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:  153 SVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVK 192          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 134
            SV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A +K
Sbjct:  212 SVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  211 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 248          
The following BLAST results are available for this feature:
BLAST of EL492546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TPIS_PETHY1.883e-1486.05Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ORYSJ6.058e-1387.50Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_COPJA7.912e-1385.00Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH1.033e-1285.00Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_SECCE1.763e-1285.00Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE2.302e-1285.00Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_LACSA3.007e-1282.50Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HORVU1.492e-1182.50Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_RAT5.670e-1178.95Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_RABIT5.670e-1178.95Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionC2881 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2881, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492546 ID=EL492546; Name=EL492546; organism=Citrus sinensis; type=EST; length=251bp
GACTGCGCTAGTGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCA
CAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGA
GTTCATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTT
TATTTCAAGCGCAGTTTGCTGATGAAGTATTTACTGTTTGTGGATATATA
GAATACGTTTGGTATAATTTCAGAATTACTTTTGTTTTACTCAGGACTCA
T
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