CN186220
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 3.010e-41 Identity = 73/91 (80.22%), Postives = 85/91 (93.41%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 277 VKTYDQFR++GC CPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR Sbjct: 25 VKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3) HSP 1 Score: 166.007 bits (419), Expect = 8.759e-41 Identity = 72/91 (79.12%), Postives = 83/91 (91.21%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 277 VKTYDQFR+SGC CPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+ RVQYVPPKR Sbjct: 25 VKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.839e-14 Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 268 V TY +FR+ GC C F + +++ CT+ F GII++ +P +SW A+W R+ +V G Y VS LP+D++ ED+ +QY+P Sbjct: 23 VMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13 Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 2 Query: 11 TYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 268 T +F+ GC C F + +++ CT+ F G+I++ +PT+SW A++ R+ +VPG Y + VS LP+D+++ EDE R+QY+P Sbjct: 2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262 VKT DQF GC C + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262 VKT DQF GC C + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262 VKT DQF GC C + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262 VKT DQF GC C + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262 VKT DQF GC C + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2 Query: 5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP 220 VKT DQF GC C + +M + E V +CT+ +F+G+I++M P SW A+W RIG F PG Y + V+ LP Sbjct: 22 VKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94 The following BLAST results are available for this feature:
BLAST of CN186220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186220 ID=CN186220; Name=CN186220; organism=Citrus sinensis; type=EST; length=503bpback to top |