CN186220

Overview
NameCN186220
Unique NameCN186220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.010e-41
Identity = 73/91 (80.22%), Postives = 85/91 (93.41%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 277
            VKTYDQFR++GC  CPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR
Sbjct:   25 VKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 8.759e-41
Identity = 72/91 (79.12%), Postives = 83/91 (91.21%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 277
            VKTYDQFR+SGC  CPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+  RVQYVPPKR
Sbjct:   25 VKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.839e-14
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 268
            V TY +FR+ GC  C  F  +    +++  CT+  F GII++ +P +SW A+W R+  +V G Y   VS  LP+D++   ED+ +QY+P
Sbjct:   23 VMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   11 TYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 268
            T  +F+  GC  C  F  +    +++  CT+  F G+I++ +PT+SW A++ R+  +VPG Y + VS  LP+D+++  EDE R+QY+P
Sbjct:    2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP 220
            VKT DQF   GC  C  + +M  + E V +CT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Sbjct:   22 VKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94          
The following BLAST results are available for this feature:
BLAST of CN186220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SPT42_ARATH3.010e-4180.22Transcription elongation factor SPT4 homolog 2 OS=... [more]
SPT41_ARATH8.759e-4179.12Transcription elongation factor SPT4 homolog 1 OS=... [more]
SPT4_NEUCR1.839e-1438.20Transcription elongation factor spt-4 OS=Neurospor... [more]
SPT4_GIBZE2.033e-1337.50Transcription elongation factor SPT4 OS=Gibberella... [more]
SPT4H_MACFA3.468e-1339.08Transcription elongation factor SPT4 OS=Macaca fas... [more]
SPT4H_HUMAN3.468e-1339.08Transcription elongation factor SPT4 OS=Homo sapie... [more]
SPT4H_BOVIN3.468e-1339.08Transcription elongation factor SPT4 OS=Bos taurus... [more]
SPT41_MOUSE3.468e-1339.08Transcription elongation factor SPT4 1 OS=Mus musc... [more]
SPT4H_PONAB4.530e-1339.08Transcription elongation factor SPT4 OS=Pongo abel... [more]
SPT4H_DANRE5.916e-1345.21Transcription elongation factor SPT4 OS=Danio reri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186220 ID=CN186220; Name=CN186220; organism=Citrus sinensis; type=EST; length=503bp
GCGGGTCAAAACCTATGATCAGTTTAGAGAATCGGGATGCCACATCTGTC
CCTTCTTCAAGATGGATGAAGACCACGAGCGTGTTGTTGATTGTACTACC
CCTAATTTTAATGGCATTATATCAGTCATGGATCCAACTAGAAGCTGGGC
TGCTCGCTGGTTGCGAATTGGAAGATTTGTCCCTGGTTGTTATACTCTTG
CTGTCTCAGAAGCCCTACCTGAGGACTTGCAGAACTTATGCGAAGACGAG
CGCGTGCAATATGTGCCGCCAAAACGTTAATGACAGTTTGAGCAGTGCAT
TGTCTGTAAAGATTATATCTGTTTCGGGTTACTTCGGAGATGACATGTTT
AACGATTATATGCAACTGTAGCTGCTAATGTTGACTTGAATTTCTTGTGC
CCAATGCTTGTGTAGTAATCCTATTTATGTTTGTAACTTGTATGCTGCGT
TTTGATTTTTTAATGGAGTTCTAGAAACTTTTGAGTTAAAAAAAAAAAAA
AAA
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