CN186208

Overview
NameCN186208
Unique NameCN186208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186208 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 78/154 (50.65%), Postives = 96/154 (62.34%), Query Frame = 3 
Query:  198 SSISIK-GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAELATPEAMAFIVKHGTGIVCVSMKGEDLERLDLP 653
            S+ SIK   GK +A +IS E DLL++ NGN  ++  +  DD+     L+ D+++ G LAAD+AP                 PT GFSSIPEAIEDIRQGK               L+MAA+LATPEAMAFIV+HGTGIVCVSMK +DLERL LP
Sbjct:   44 STFSIKTNTGKVKAAVISREDDLLSFTNGNTPLSNGSLIDDRTEE-PLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLP 196
The following BLAST results are available for this feature:
BLAST of CN186208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RIBBA_ARATH1.879e-3050.65Riboflavin biosynthesis protein ribBA, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186208 ID=CN186208; Name=CN186208; organism=Citrus sinensis; type=EST; length=653bp
GGCTTAAACCCATAACAAATACAAGGGGAAAATAATTAATGGCGGCGTCT
CTCAACATATCGTCTCCTTCAACTTCAGCTCTCTCTTCTCCTCCAGCATG
CAGAAATGTGAAATTTGTTAGTGGATTTCCCAGTACGAAGTCACTTTTGG
CAAATGGGCACTCTTCATATTTGGCCTTTGTAAAGCTAGCTACTAAATCA
TCCATTAGTATCAAGGGTGTCGGCAAAACTAGAGCTACGCTGATATCTGG
AGAAGGTGACCTTTTAGCTTATCCCAATGGCAATAACCTTGTGGCCGAAA
GTACTGGTGCTGATGATCAATTGGTGGGGATTGAGTTACAACCGGATGCA
ATAGCATTTGGAGCACTTGCAGCAGATACTGCTCCCACAACTTTTGGATT
TTCCAGTGATGATGATGAATTTGATTTGGATAGCCCTACAGAAGGTTTTT
CTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGTAGTG
GTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCAGC
AGAGCTGGCAACACCTGAAGCTATGGCATTTATTGTGAAACATGGAACTG
GAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGATCTT
CCT
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