CN186206

Overview
NameCN186206
Unique NameCN186206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.955e-77
Identity = 143/211 (67.77%), Postives = 173/211 (81.99%), Query Frame = 2
Query:  107 NMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVPT 739
            +M  EE++RLKYL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P+E+LK++D+KVD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+KYEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF            +CSE YN TVV AA+KGY+V+SY+PLVPT
Sbjct:   13 DMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPT 223          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.741e-63
Identity = 118/206 (57.28%), Postives = 154/206 (74.76%), Query Frame = 2
Query:  122 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVPT 739
            EE+RLKYL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +P ELL F+DRKV+ S+ +L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF            Y SE YNQ+V   A++GY V+ YLPL+PT
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPT 221          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.177e-52
Identity = 109/222 (49.10%), Postives = 146/222 (65.77%), Query Frame = 2
Query:   83 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVPT 739
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL               S  YN  V   A +G  V++YLPLVPT
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPT 225          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.177e-52
Identity = 109/222 (49.10%), Postives = 146/222 (65.77%), Query Frame = 2
Query:   83 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVPT 739
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL               S  YN  V   A +G  V++YLPLVPT
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPT 225          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.861e-44
Identity = 100/206 (48.54%), Postives = 124/206 (60.19%), Query Frame = 2
Query:  122 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVPT 739
            EE+RLKYL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P+E +KF+D+ VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV               +  AK LY+  EPKAEQYAV  WR LN++PL             Y SE YN  V    ++GY+VSSYLPL+PT
Sbjct:    6 EEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV---------------QEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPT 192          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.121e-40
Identity = 93/182 (51.10%), Postives = 115/182 (63.19%), Query Frame = 2
Query:  194 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVPT 739
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P+ELLK+ DRKV E    LD  VP  +K+V +QA           RSV SEV+  GV+                 AK +YSKYEP AEQ AVSAWRKLNQ+PLF            YC+E YN+ +VS+A+KGY+VS+YLPLVPT
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQA-----------RSVVSEVRRDGVS---------------TFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPT 157          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.205e-38
Identity = 84/206 (40.78%), Postives = 119/206 (57.77%), Query Frame = 2
Query:  119 EEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVP 736
            ++E +LK+LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +P +LL F+DRKVD+    ++  VP ++KQ  +QAL           +VA+EV+  GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF            Y SE YN  V    D+ Y  + YLP++P
Sbjct:   36 DDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIP 219          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 79/207 (38.16%), Postives = 96/207 (46.38%), Query Frame = 2
Query:  122 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPK--AEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEXYNQTVVSAADKGYKVSSYLPLVP 736
            +E  LK+L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP+ K+V  QA      A   A+S   E +T G                 P A   Y+  E K      +V  W KLNQ                + S  YN  V    + GY +  YLPLVP
Sbjct:    9 KEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG-----------------PKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVP 198          
BLAST of CN186206 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 2
Query:   74 MAEEKNVPSQQNMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEV 460
            MAE+++  +QQ     + + LKYL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA + AP  ARS+AS +
Sbjct:    1 MAEDED--NQQG----QGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLASSL 123          
The following BLAST results are available for this feature:
BLAST of CN186206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH1.955e-7767.77REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI2.741e-6357.28Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ2.177e-5249.10REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI2.177e-5249.10REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR4.861e-4448.54Small rubber particle protein OS=Hevea brasiliensi... [more]
SRP_PHAVU1.121e-4051.10Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y2778_ARATH5.205e-3840.78REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
Y1736_ARATH9.209e-2738.16REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR1.522e-2144.19Rubber elongation factor protein OS=Hevea brasilie... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186206 ID=CN186206; Name=CN186206; organism=Citrus sinensis; type=EST; length=739bp
GCGGTTTTCCTCGAACAAGTTAAAGGCTTCTTCTACGACGTCCTTTCACA
GTCATTCGTCAATCATCATCATCATGGCCGAAGAGAAGAACGTGCCGTCC
CAACAAAACATGGATATTGAGGAGGAGCAGAGGCTGAAATATTTGGAGTT
TGTGCAAGTTGCCACAATCCATGTGTTGCTGTGCTTCCATAATCTATATG
GTTATGCTAAAGCCAAGTCCGGACCATTGAAACCTGGTGTGGAGTCCGTT
GAGGGGACTGTCAAGAATGTGGTTGGACCTGTTTATGATAAGTATCATGG
TCTCCCGATTGAGCTCCTTAAGTTTATTGATCGCAAGGTGGATGAGTCTG
TGACCAAGCTGGACTGCCGTGTGCCTCCAGTCCTCAAGCAAGTCCCTGCC
CAAGCTCTCTCCGCTGCTCAAATGGCTCCCGTAGTGGCACGATCCGTGGC
TTCTGAAGTGAAGACTGCCGGTGTAGCCGGCACTGCCTCAGGAATGGCAA
AATCCGTTTACACCAAGTACGAGCCAGCAGCCAAGGAACTTTACTCCAAG
TACGAACCAAAAGCGGAGCAATATGCTGTGTCAGCTTGGCGCAAGCTCAA
TCAGATGCCACTATTCCCTCAAGTAGCTCAAGTTGTTGTGCCAACTGCTG
CCTATTGTTCCGAANAATACAACCAAACAGTGGTGAGCGCTGCAGATAAA
GGGTACAAGGTCTCCTCATATTTGCCTTTGGTCCCTACT
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