EY665730

Overview
NameEY665730
Unique NameEY665730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665730 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.126e-13
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:  321 SSILEEIAEEVEKIDKAMGTGIDVRWGGGGFKKTMSTGLSGTRAGGKVCLGGMGDNEMAGPINTNAAREEVLKGEFR 551
            S+ ++++ EEV KI   M TG+DV +   GF KTMST L+ TRAGGKVCL G+  +EM  P+   AARE  + G FR
Sbjct:  236 STNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFR 312
The following BLAST results are available for this feature:
BLAST of EY665730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IDND_VITVI4.126e-1350.65L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-H10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665730 ID=EY665730; Name=EY665730; organism=Citrus sinensis; type=EST; length=831bp
CCCACGCGTTTCGGCCCAGACAATAAGAAGAGGGCCGCCCTCGNCCNCNC
NNCNNCGGCGCCCCTTAAAAAAAAGNNNGGNNNNNNANNNANNANAANAA
NANGNNAAGAGGAAAGAAGAGAGGAGGAGGAAGACCTTCTTACAAATTCC
TCAGTTCATTTTTGTTCTCAGTACCTTTTTGTTCTCTGTTTGAAAGTTGA
CCACTCTAATCTGCATTATTCTTGTTATCAGAGTAGAGGTGAGCTTGAGC
TTTGGTTCGTTTGAAAATTGTTCATGTGCTCCTCACGCTTGTTTTTTCTG
TGTGAATAAACCGCTATGCGTCGAGTATTTTGGAGGAAATAGCTGAAGAA
GTGGAAAAGATAGATAAAGCCATGGGGACAGGAATAGATGTGAGGTGGGG
TGGGGGGGGCTTTAAGAAAACCATGTCAACAGGACTGAGTGGTACTCGGG
CAGGTGGTAAAGTTTGCCTGGGGGGGATGGGTGATAATGAAATGGCTGGA
CCAATCAATACAAATGCTGCAAGGGAGGAGGTGTTGAAGGGAGAGTTTAG
AAAAGGAAAAAAGCTAGGAACAGGTTGGTGAGTTCCTGAGAAAGAGAAAG
GTATGAGATAAAGCGCATTGGAATGGTAGGAATGAGGGTGTGGCGCGAGG
AATGGTAAAGGGGGTATTAGAACGAGTTGGCGAGAAGGAGGCAGAATAAA
GAAGATAGGAATTCAATGGAGAAAATAAAAATAAAAAAAGGAGTTTTAAG
TAAAAATAGATAAAAGAAGAAGTGGGCCAATAGAAATTAATTGAGAGATA
AACAGTGAGGGGAGAGCGGGAGATTTGGGAA
back to top