CX043284

Overview
NameCX043284
Unique NameCX043284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043284_ssr436 microsatellite CX043284_ssr436:436..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig723 contig Csv1_Contig723:5..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 7.162e-110
Identity = 191/227 (84.14%), Postives = 212/227 (93.39%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR+ILYWIAQLLG+VVACLLLK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVYTVYATAVDPKKG++G IAP+AIG IVGANIL GGAFDGASMNPAVSFGPAVVSW WT HWVYW+GPFIGA
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGA 227          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.678e-106
Identity = 184/227 (81.06%), Postives = 207/227 (91.19%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            MP+ RIA+G PGE SHPD  KAA+AEF SM+IFVFAG GSGMAFSKLTDGG +TP+GLI+ASLAHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+L+++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV +WNAVVFEIVMTFGLVYTVYATAVDPKKG+LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV+  W  HWVYWLGPF+GA
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVGA 227          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 6.493e-103
Identity = 182/226 (80.53%), Postives = 201/226 (88.94%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            MPI  IAIG P EA+ PDALKAALAEF S +IFV AG GSGMAF+KLT+ GA+TP+GL++A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR ILYWIAQLLGSVVACL+LKF+TGGL   AF LS+GV   NA VFEIVMTFGLVYTVYATA+DPK G+LGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPAVVSWTWT HWVYW GP +G
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVG 226          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 8.480e-103
Identity = 182/227 (80.18%), Postives = 203/227 (89.43%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            MP+ RIA+G PGE SHPD  KAA+AEF S +IFVFAG GSGMAFSKLTDGGA+TPAGLI+ASLAHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+LL++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV + NAVV E+VMTFGLVYTVYATAVDPKKG+LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV+  W  HWVYW+GP  GA
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWVGPLAGA 227          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.089e-101
Identity = 183/226 (80.97%), Postives = 200/226 (88.50%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            MPI  IA+G+  E  HP ALKAALAEF S +IFVFAGQGSGMAFSKLT GGA+TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYWIAQLLGS VAC LL+FSTGGL T  F L +GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPA+VSW+W + WVYW+GP IG
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIG 225          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.553e-99
Identity = 180/226 (79.65%), Postives = 196/226 (86.73%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            MPI RIA+G+  E  HP ALKAA AEF S +IFVFAGQGSGMAFSKLT GG +TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYW+AQLLGS VAC LL+FSTGG  T  F L +GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPA+VSW W   WVYW+GP IG
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQWVYWVGPLIG 225          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 1.073e-97
Identity = 177/227 (77.97%), Postives = 195/227 (85.90%), Query Frame = 3
Query:   90 MPIYRIAIG-TPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            MP   IAIG    E  HP+AL+AALAEF S +IFVFAG GSG+AF+K+TD GA+TP+GL++A+LAHAF LFVAVSVGANISGGHVNPAVTFG  +GG+ITLLR ILYWIAQLLGSV AC LL F+TGG    AF LS+GV S NA+VFEIVMTFGLVYTVYATAVDPK G+LGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPAVVSWTWT HWVYW GP IG
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIG 227          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.110e-94
Identity = 176/226 (77.88%), Postives = 191/226 (84.51%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITLLR I+Y IAQLLGS+VA  LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPAVVSW+W+ HWVYW GP IG
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIG 225          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 3.023e-92
Identity = 174/226 (76.99%), Postives = 189/226 (83.63%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAV FGAFVGG+ITLLR I+Y IAQLLGS+V   LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPAVVSW+W+ HWVYW GP IG
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIG 224          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.902e-78
Identity = 134/226 (59.29%), Postives = 175/226 (77.43%), Query Frame = 3
Query:   93 PIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            P  R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  KL     STP GL++ SLAHA AL VAV+V  NISGGHVNPA+TFGA +GG ++L+R++ YW+AQLLG+VVA LLL+ +TGG+    FAL+SGV  W+AV+ E  MTFGL+Y  YAT +DPK+G++GTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPA+V W W  HWVYWLGPF+GA
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFVGA 232          
The following BLAST results are available for this feature:
BLAST of CX043284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
TIP13_ARATH7.162e-11084.14Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ORYSJ3.678e-10681.06Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH6.493e-10380.53Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_MAIZE8.480e-10380.18Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ2.089e-10180.97Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE2.553e-9979.65Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ARATH1.073e-9777.97Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDTR1.110e-9477.88Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA3.023e-9276.99Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_ORYSJ1.902e-7859.29Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A11-B22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043284 ID=CX043284; Name=CX043284; organism=Citrus sinensis; type=EST; length=770bp
AACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCTA
AAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCTA
CAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTAA
AGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGGC
CAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCAC
GCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTTG
TAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGCT
GTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAGCAT
CCTGTATTGGATTGCACAGTTGCTAGGATCAGTTGTTGCTTGCTTGCTGC
TCAAGTTTTCCACCGGTGGATTGGAAACATCGGCATTCGCACTATCATCT
GGCGTCTCATCATGGAATGCAGTTGTCTTTGAGATTGTGATGACCTTTGG
CTTGGTCTACACAGTGTATGCAACAGCAGTGGATCCAAAGAAGGGAAATC
TGGGCACTATTGCACCAATTGCAATCGGTTTCATTGTTGGTGCCAACATT
TTGGCTGGTGGCGCTTTTGATGGTGCATCAATGAACCCAGCAGTCTCTTT
TGGCCCTGCTGTGGTTAGCTGGACTTGGACTACCCACTGGGTCTACTGGC
TTGGACCATTTATTGGCGCC
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