EY665717

Overview
NameEY665717
Unique NameEY665717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665717_ssr157 microsatellite EY665717_ssr157:157..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12683 contig Csv1_Contig12683:35..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.124e-26
Identity = 68/159 (42.77%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  340 RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFECGK----GPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I++  +S H+WID C L    DGLID    ST +T+S   F
Sbjct:   53 QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYF 210          

HSP 2 Score: 25.7942 bits (55), Expect = 8.124e-26
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:  788 FSSHDKNMLLGANPSPVGEK 847
            F+ HDK MLLG + S +G+K
Sbjct:  210 FTQHDKVMLLGHDDSYMGDK 229          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.473e-23
Identity = 70/173 (40.46%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  340 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEF-EC-----------------GKGPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            RALA  A GFG+ A+GG +G +Y VT  +DD     PG+LR      +PLWI F     I LR+ L ++SYKTIDGRG +V++  G  + ++   HVII  +   +C                  KG D DAI I   S HIWID C      DGLID    ST +T+S   F
Sbjct:   54 RALADCAVGFGKSAVGGKYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIF-DSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYF 225          

HSP 2 Score: 25.0238 bits (53), Expect = 3.473e-23
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  788 FSSHDKNMLLGANPSPVGEK 847
            F+ HDK MLLG N + V +K
Sbjct:  225 FTQHDKVMLLGHNDNNVEDK 244          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.467e-23
Identity = 69/163 (42.33%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  346 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FECGKGPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            LA  + GFG   +GG +G +Y VT  +D+ P     G+LR G   +EPLWIVF  +  I L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D D I I    K IW+D CS+    DGLID    ST IT+S   F
Sbjct:   99 LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDGDGISIFGSQK-IWVDHCSMSHCTDGLIDAVMGSTAITISNNYF 260          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 70/162 (43.21%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  346 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEF-EC-----------GKGPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVS 777
            LA  A GFGR +IGG  G  Y VT   DD P     G+LR      +PLWI+F+    I L+  L V+SYKTIDGRG  V++  G  L L +  ++II NL   +C           G   D D I I  +S+ IWID C+L    DGLID    STDIT+S
Sbjct:   68 LADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNGSTDITIS 228          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.717e-21
Identity = 68/168 (40.48%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  346 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEF-ECGKG-----------------PDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVS 777
            LA  A GFG+ AIGG  G +Y VT  A+D P     G+LR     +EPLWI+F+    I L+  L ++S+KTIDGRG  V +T G  L++    ++II  +   +C  G                  D DA+ I    KH+WID CSL + DDGLID    ST IT+S
Sbjct:   80 LADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIF-GGKHVWIDHCSLSNCDDGLIDAIHGSTAITIS 246          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.634e-21
Identity = 67/173 (38.73%), Postives = 87/173 (50.29%), Query Frame = 1
Query:  340 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFECGK------------------GPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            +ALA  A+GFG+  +GG  G +Y VT+  DD       G+LR G     PLWI+FE    I L   + V+S KTIDGRG +V++   G  L   ++VII N+     K                  G D DAI I   S+ IWID CSL    DGL+D    +T +TVS   F
Sbjct:   65 KALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIINAGFTLNGVKNVIIHNINMHDVKVNPGGLIKSNDGPAAPRAGSDGDAISISGSSQ-IWIDHCSLSKSVDGLVDAKLGTTRLTVSNSLF 236          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.032e-20
Identity = 66/173 (38.15%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  340 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLE-----------FECGKGP-------DADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            +ALA  A+GF +   GG HG +Y VT+  DD       G+LR       PLWI+F+ +  IHL   L V+S KTIDGRG +V +   GL L   +++II N+             +   GP       D DAI +   S+ IWID CSL    DGL+D    S+ +TVS   F
Sbjct:   67 QALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAGLTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPILRQQSDGDAINVAGSSQ-IWIDHCSLSKASDGLLDITLGSSHVTVSNCKF 238          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.124e-20
Identity = 71/177 (40.11%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  340 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE----FECGK--------------GPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPFFFS 798
            + LA    GFG+ A+GG  G  Y VT  +DD      PG+LR G   +EPLWIVF  +  I L+  L  +SYKT+DGRG  V + G G + L+   ++II N+     ++ G                 D D I I   SK IWID CSL    DGLID    ST IT+S    FFS
Sbjct:   91 QGLADCGIGFGQYALGGKGGQFYFVTDSSDDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIF-GSKDIWIDHCSLSRCKDGLIDAVMGSTGITISNN--FFS 264          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.491e-19
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  340 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLE-----------FECGKGP-------DADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            +AL   A+GFG+   GG  G +Y VT+  DD       G+LR G     PLWI+F+    I+L+  + V+S KTIDGRG +V+L   G+ L   ++VII N++            +   GP       D DAI +   S  IWID C+L    DGL+D +  ST +T+S   F
Sbjct:   66 QALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGGITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQSDGDAIHV-TGSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKF 237          
BLAST of EY665717 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.657e-19
Identity = 67/177 (37.85%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  328 DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDG----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEF-EC-----------------GKGPDADAIQIKPKSKHIWIDRCSLRDYDDGLIDNHRKSTDITVSRGPF 789
            D +   LA  A GFG   +GG  G +Y VT   D+     PGSLR G    +PLWI F     I L + L V+SYKTIDGRG +V++  G  + +++  +VI+  +   +C                  KG D DAI I   S ++WID C L    DGLID    ST IT+S   F
Sbjct:   60 DVNREDLADCAVGFGSSTLGGKKGNIYVVTNPYDNAQNPHPGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKSGKVRSSPTHVGHRKGSDGDAITIF-GSSNVWIDHCYLASCTDGLIDVIHASTAITISNNYF 235          

HSP 2 Score: 22.3274 bits (46), Expect = 2.657e-19
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  788 FSSHDKNMLLGAN 826
            F+ HDK MLLG N
Sbjct:  235 FTQHDKVMLLGHN 247          
The following BLAST results are available for this feature:
BLAST of EY665717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL4_ARATH8.124e-2642.77Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
PEL2_ARATH3.473e-2340.46Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL13_ARATH6.467e-2342.33Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL21_ARATH1.220e-2143.21Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL11_ARATH2.717e-2140.48Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
MPA11_AMBAR4.634e-2138.73Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPA12_AMBAR1.032e-2038.15Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
PEL12_ARATH5.124e-2040.11Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
MPAA2_AMBAR1.491e-1936.99Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
PEL17_ARATH2.657e-1937.85Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665717 ID=EY665717; Name=EY665717; organism=Citrus sinensis; type=EST; length=895bp
CAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGACTCTTCAATGAA
ACAGACAATAACTGTAACGAACGTTGATTAAATTTAGCTCGAAGCCATTG
GTCCGGTGAGTTTCAGTAACTCTCAACCATTAATATCAATGGGAAACTCA
CACGGGCATCATCATCATCATCGCAAGAACCGTAACGAAGCTAACAGTTA
CTTCCCACACCAAACGCCTACTCCTACCCCTCCGCCCTTTAAATTTGGCC
CGTCTGATCATCATCAACATCAACCTGCAGCACAATTTCAGAACAACTCG
ACGATGTCATTGCCTTACGCTCACGTTGATTGCAGCTTACGTGCTCTCGC
CGGCCAGGCCGAAGGGTTTGGTCGCCTCGCCATTGGTGGTCTCCACGGAC
CCCTCTACCACGTCACCACTTTAGCCGATGATGGGCCAGGATCACTTCGA
GAAGGATGCCGTATGAAAGAACCTCTTTGGATTGTCTTTGAAGTGTCAGG
CACCATTCATCTCCGCTCTCACTTGAGTGTCTCATCTTACAAAACCATAG
ATGGCCGAGGACAAAGGGTGAAACTTACAGGAAAGGGTTTGAGGCTGAAG
GAATGTGAACATGTTATAATATGCAATCTAGAGTTTGAATGTGGTAAAGG
ACCTGATGCTGATGCCATTCAAATAAAACCTAAGTCGAAACACATATGGA
TAGACCGTTGTAGTCTCCGTGATTATGATGATGGGCTGATAGATAATCAC
AGAAAAAGCACAGATATTACAGTTTCTAGGGGTCCCTTTTTCTTCTCATG
ACAAAAACATGCTCCTTGGAGCAAATCCCTCTCCCGTGGGGGAAAAATGT
ATTCCAAATGACCCTTCCTCATTGGTTTTTTTGAAGGGGAATCAA
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