EL492529

Overview
NameEL492529
Unique NameEL492529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3394 contig Csv1_Contig3394:336..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.728e-26
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 VGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            +G++GAR E +LD+A I  NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F  + DFIHEGV+I   AKK     G  L+DF +F T  N     +VADL  RVE  +T+F IPG
Sbjct:  391 IGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKSF-TETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.416e-25
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+RGF E +F  +  FI EGV I LE K   + +KLQDF +F +  P  S  + +ADLR RVE     FP+PG
Sbjct:  390 GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKS--KTTKLQDFKSFLLKDPETS--HQLADLRQRVEQFARAFPMPG 500          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 58/115 (50.43%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K+  + +KLQDF +F +  P  S   ++ADLR RV+     FP+PG
Sbjct:  390 GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKR--KTAKLQDFKSFLLKDPETS--QHLADLRRRVQQFARAFPMPG 500          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.156e-25
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            GIDG+RVEK+L+   I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A++  + V I L+ K   QG+KL+DF++ + S + ++ + +A LR  VE    QFP  G
Sbjct:  395 GIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KLQDF +F+   +      +A+LR RVE     FP+PG
Sbjct:  390 GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPG 500          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.383e-25
Identity = 57/114 (50.00%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            GIDG+RVEK+L+   I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++FV +ADF    V+I ++ K   QG+KL+DF+  + S +  + + +A LR  VE    QFP  G
Sbjct:  396 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLES-SAPIKSEIAKLRHDVEEYAKQFPTIG 508          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.181e-25
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 VGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            +G++GAR E ILD+A I  NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F  + DFIHEGV+I   AKK     G  L+DF  F T+ N      VA+L  RVE  + +F IPG
Sbjct:  395 IGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKAF-TATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 51/114 (44.74%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            GIDG+RVEK+L++  I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++FV +A++    V + L+ K   +G+KL+DF+  + + ++ + + ++ L+  VE    QFP  G
Sbjct:  396 GIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSY-VQSEISKLKHDVEEFAKQFPTIG 508          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.265e-22
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            GIDG+RVEK+L+   I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A      V++ ++ K   QG+KL+DF+  + S  F   + ++ LR  VE    QFP  G
Sbjct:  396 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAF--QSEISKLRHDVEEYAKQFPTIG 507          
BLAST of EL492529 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.265e-22
Identity = 51/114 (44.74%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    4 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 345
            GIDG++VEK+L+   I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A F    V++ ++ K   +G+KL+DF+  + S   ++ + ++ LR  VE    QFP  G
Sbjct:  396 GIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESS--AIQSEISKLRHDVEEYAKQFPTIG 507          
The following BLAST results are available for this feature:
BLAST of EL492529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GLYC_CAEEL3.728e-2652.99Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_BOVIN1.416e-2551.30Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT1.850e-2550.43Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH3.156e-2548.25Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN4.121e-2549.12Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU5.383e-2550.00Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR9.181e-2552.14Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_PEA1.015e-2344.74Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR4.265e-2246.49Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR4.265e-2244.74Serine hydroxymethyltransferase 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC2440 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2440, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492529 ID=EL492529; Name=EL492529; organism=Citrus sinensis; type=EST; length=382bp
GTGGGTATTGATGGGGCTCGNGTAGAGAAAATTCTTGACATGGCCTCCAT
CACTCTCAACAAAAATTCAGTGCCTGGTGACAAGAGTGCTCTAGTCCCGG
GTGGTATTCGCATTGGCTCACCTGCAATGACAACTAGAGGATTTTCTGAG
AAAGAATTTGTTGCAATTGCTGACTTTATACACGAGGGTGTAGAAATAAC
CCTGGAAGCTAAAAAGTTGGTTCAAGGATCAAAGCTCCAAGACTTCATGA
ATTTTGTCACATCACCCAATTTCTCGTTGATGAATAATGTCGCCGATCTT
CGTGGTCGGGTTGAAGCTCTTACAACCCAGTTTCCCATCCCCGGAGTATG
ATTGTGTAGTTGTTTTACAGGTTACTCAGACT
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