CV887382

Overview
NameCV887382
Unique NameCV887382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7601 contig Csv1_Contig7601:876..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.249e-29
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 DFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECLA 203
            DFDIEGCPVPGP  C SNP NWWE   YQ+L A+EARRYRWVR+NHM+YDYCTD+SR+PVPPPEC A
Sbjct:  226 DFDIEGCPVPGPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECRA 292          
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.544e-29
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 3
Query:    3 DFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECLAGI 209
            DFDIEGCPVPGPA+C +N  NWWE + Y  L+ +EAR YRWVR+NHM+YDYCTDKSR+PVPPPEC AGI
Sbjct:  225 DFDIEGCPVPGPADCPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293          
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.947e-14
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 3
Query:    6 FDIEGCPVPGPAN---CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 197
            F ++GC    P     C +    WW+   +Q L A++ RR RWVR  + +Y+YCTDK+RYPVPPPEC
Sbjct:  224 FHVDGCEAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPEC 290          
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 3
Query:    6 FDIEGCPVPGPAN---CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 197
            F ++GC    P     C +    WW+   +Q L A++ RR RWVR  + IY+YCTD+ RYP  PPEC
Sbjct:  223 FHVDGCEAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPEC 289          
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.269e-12
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 3
Query:    6 FDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 197
            F ++GC     A  C +    WW+   +Q L A + +R +WVR  + IY+YCTD+ R+PVPPPEC
Sbjct:  223 FHVDGCEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPEC 287          
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 3
Query:    3 DFDIEGCPVPGPAN----CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 197
            DF + GC + G +N    C S+   WW A NYQ L+  E + Y  VR  +M YDYCTD+S+Y  PP EC
Sbjct:  222 DFALSGCNIDGRSNNVGACESS-NYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDRSKYQTPPREC 289          
BLAST of CV887382 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 3
Query:    6 FDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 197
            F I+GC     A  CA+    WW+ N ++ L A + RR +WVR+   IY+YCTD++R+PV P EC
Sbjct:  225 FHIDGCQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAEC 289          
The following BLAST results are available for this feature:
BLAST of CV887382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
XTH6_ARATH2.249e-2977.61Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH6.544e-2973.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC5.947e-1446.27Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC5.566e-1243.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH7.269e-1243.08Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH9.494e-1246.38Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_BRAOB2.115e-1144.62Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887382 ID=CV887382; Name=CV887382; organism=Citrus sinensis; type=EST; length=475bp
GAGACTTTGATATTGAGGGCTGCCCAGTTCCTGGACCAGCAAACTGTGCC
TCGAACCCAGGTAACTGGTGGGAGGCAAATAATTATCAAGCCCTCACCGC
CATGGAAGCAAGAAGATACAGATGGGTTCGTCTCAACCACATGATCTATG
ATTATTGCACTGATAAATCAAGATACCCAGTACCCCCACCGGAATGCCTT
GCCGGCATATAAATTCAACCCGCCAATTAATTAAGCAGTTGGACGGTACT
CCATATCCGTATCATATCATGTATATTACTTCACGTACACGTCCTTTGTA
TTATTCCCTATTCGTGTGAAAAGACTTATACGCATATCAAGGGAGGGGCA
GGAGGGAAAATAAACATTGTGTGCTTTTAAATGTGATTATGGGAGTGGGA
AATATGTGGGTATTCTGCTCCGCTTGTACCATATATAAGTCTGAATTTGA
TGCACAGTATTCTGTGCCAAAAAAA
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