EL492528

Overview
NameEL492528
Unique NameEL492528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5973 contig Csv1_Contig5973:188..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.114e-81
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR+DYL++KSENRIVPDGV
Sbjct:   42 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 2.744e-80
Identity = 141/154 (91.56%), Postives = 150/154 (97.40%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NS HAQEALRRAKFKFP RQKIIVSRKWGFTKF+R+DY+++KS+NRI+PDGV
Sbjct:   42 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.043e-79
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NS +AQEALRRAKFKFPGRQKIIVSRKWGFTK +R+DY R KSENRI+PDGV
Sbjct:   42 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 9.758e-78
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSR+DYL++KSE RIVPDGV
Sbjct:   42 GVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 6.325e-77
Identity = 136/153 (88.89%), Postives = 147/153 (96.08%), Query Frame = 2
Query:    5 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            VDEFPFCVHLVSWEKENVSSEALEA RIACNKYM KFAGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S HAQEALRRAKFKFPGR+KIIV+RKWGFTK++R+DYL++K+ENRIVPDGV
Sbjct:   43 VDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 2.403e-76
Identity = 136/154 (88.31%), Postives = 144/154 (93.51%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R+DY + + E RIVPDGV
Sbjct:   42 GVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 4.100e-76
Identity = 135/154 (87.66%), Postives = 144/154 (93.51%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R+D+ + + E R+VPDGV
Sbjct:   42 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 5.354e-76
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ +HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R++Y + ++  RIVPDGV
Sbjct:   42 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 9.133e-76
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGV
Sbjct:   42 GVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGV 195          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 9.133e-76
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGV 463
            GVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGV
Sbjct:   42 GVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGV 195          
The following BLAST results are available for this feature:
BLAST of EL492528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL10_SOLME1.114e-8194.8160S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_VITRI2.744e-8091.5660S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES1.043e-7992.8660S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_MAIZE9.758e-7889.6160S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL10_PINTA6.325e-7788.8960S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL102_ARATH2.403e-7688.3160S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH4.100e-7687.6660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL103_ARATH5.354e-7687.6660S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ORYSJ9.133e-7687.6660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI9.133e-7687.6660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC2430 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2430, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492528 ID=EL492528; Name=EL492528; organism=Citrus sinensis; type=EST; length=469bp
AGGGGTTGATGAATTCCCTTTCTGTGTGCACTTGGTGTCTTGGGAAAAGG
AGAACGTATCTAGTGAAGCTCTTGAGGCTGCTCGAATTGCTTGCAACAAA
TATATGGCCAAGTTTGCCGGGAAAGATGCTTTCCATTTGCGAGTCCGTGT
TCACCCATTCCATGTCTTGCGTATCAACAAAATGCTTTCATGTGCTGGAG
CTGATAGGCTTCAAACTGGTATGAGGGGTGCTTTCGGTAAACCACAGGGC
ACTTGTGCTAGAGTTGCCATTGGACAGGTCCTCCTGTCAGTTCGCTGCAA
GGATAGCAATAGTCTTCATGCTCAAGAGGCTCTTCGTCGTGCAAAGTTCA
AGTTTCCTGGTCGCCAAAAAATCATTGTCAGCAGAAAGTGGGGTTTCACC
AAGTTTAGCCGCAGTGATTATTTGAGGTTCAAGTCAGAGAACCGTATTGT
GCCCGATGGTGTTACTAGA
back to top