CV887373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.164e-66 Identity = 105/146 (71.92%), Postives = 116/146 (79.45%), Query Frame = -2 Query: 409 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 846 FV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV LKSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+ ARER+D AL EGV+ LKL+L+K ES R FN QKYKH++ Sbjct: 67 FVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212 HSP 2 Score: 69.707 bits (169), Expect = 1.164e-66 Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = -3 Query: 840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971 GNPGDKYKGTR N+GFEMID FAES GI MN V+ KA GQG + Sbjct: 25 GNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFV 68
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.277e-46 Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = -2 Query: 406 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 843 +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV L++V+ + G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +QKYK R+ Sbjct: 111 IGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256 HSP 2 Score: 57.7658 bits (138), Expect = 1.277e-46 Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG+KY GTR NVGFEM+D A +GI+MNT+ K+ G G Sbjct: 68 GNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIG 109
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.211e-45 Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = -2 Query: 418 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 843 + D P+LLAKPQTYMN SGES G LA++Y++PL +L+ +D+M LP GV +KSVM + G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+ G + FN +QKYK Sbjct: 95 IEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYK 236 HSP 2 Score: 59.3066 bits (142), Expect = 5.211e-45 Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = -3 Query: 840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971 GNPG+KY GTR NVGFEMID A +G+ MNT+ KA G G + Sbjct: 52 GNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAI 95
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.501e-44 Identity = 71/142 (50.00%), Postives = 97/142 (68.31%), Query Frame = -2 Query: 418 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 843 +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL +LV +D+M LP GV L++VM +RE RL IGIG PPG+MD +AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +QKYK Sbjct: 114 IGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYK 255 HSP 2 Score: 58.151 bits (139), Expect = 1.501e-44 Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG KY GTR NVGFEM+D A +GI+MNT+ K+ G G Sbjct: 71 GNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIG 112
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.629e-43 Identity = 72/142 (50.70%), Postives = 94/142 (66.20%), Query Frame = -2 Query: 418 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 843 VG+ P+LL KPQ YMN SGES GPLAAYY++PL +L+ +DDMGL GV LK+V + G R + RL IGIG PPG MD KAFLLQKF+ + R+++D L++GVE +K L+ +G ++S FN QKYK Sbjct: 101 VGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 242 HSP 2 Score: 54.299 bits (129), Expect = 1.629e-43 Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG KY GTR N+GFEMID A + ISMNT+ KA G G Sbjct: 58 GNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIG 99
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.354e-42 Identity = 64/139 (46.04%), Postives = 94/139 (67.63%), Query Frame = -2 Query: 427 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 843 +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP ++S++N+ + NR+F RLRIGIGRPPG+MDP F+L+ FN +E +D A G+E ++++ +G +SA + NT Q Sbjct: 105 IGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243 HSP 2 Score: 56.6102 bits (135), Expect = 1.354e-42 Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG Y+GTR NVGFEMID AE++GIS++++ KA G+G Sbjct: 62 GNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 2.126e-30 Identity = 62/147 (42.18%), Postives = 97/147 (65.99%), Query Frame = -2 Query: 433 SLQSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 873 + ++ F +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G ++S+++ +G+R+F RLRIGIGRPPG+MD F+L++FN +E +D Q G+E +++LL +G +SA NT Sbjct: 134 NFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNT 280 HSP 2 Score: 69.3218 bits (168), Expect = 3.752e-11 Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3 Query: 840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971 GNPG KY+GTR NVGFEM+DA A+++GISMNTV+ KA FG+G++ Sbjct: 101 GNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVI 144
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.974e-28 Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = -2 Query: 697 QSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 867 ++ F V PVLLAKPQTYMNLSGES GPLAAYYKLPLNRVLV DDM LPCGV Sbjct: 102 KALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGV 158 HSP 2 Score: 59.6918 bits (143), Expect = 3.974e-28 Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = -3 Query: 840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971 GNPG+KY+ TR NVGF+MID FA+SQGIS+ KA FG+G++ Sbjct: 67 GNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMV 110
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.006e-25 Identity = 48/131 (36.64%), Postives = 83/131 (63.36%), Query Frame = -2 Query: 451 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 843 VGDAPV+LAKP +YMNLSG L+A+YK+P++R++V HD++ +P L+S+ + G+ ++ R+R+GIGRPPG+MD +F+LQ F+ R+ +D + + ++ +++ GL ++ Sbjct: 84 VGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213 HSP 2 Score: 36.5798 bits (83), Expect = 1.006e-25 Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = -3 Query: 891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971 GNPG KY G R NVGF ++D A +G Sbjct: 41 GNPGPKYAGNRHNVGFMVVDELAAQRG 67
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCPA (Peptidyl-tRNA hydrolase OS=Mycobacterium paratuberculosis GN=pth PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 4.328e-23 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = -2 Query: 460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828 V++AKP+ YMN SG GPLA +Y +P ++V HDD+ L G L+SV N G+++F R+RIGIGRPPG+ DP AF+L+ F + R + T ++ + +LL+ GL Sbjct: 60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVANAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181 HSP 2 Score: 33.8834 bits (76), Expect = 4.328e-23 Identity = 15/27 (55.56%), Postives = 16/27 (59.26%), Query Frame = -3 Query: 891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971 GNPGD Y TR NVGF + D A G Sbjct: 11 GNPGDNYARTRHNVGFMVADLLAARMG 37 The following BLAST results are available for this feature:
BLAST of CV887373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887373 ID=CV887373; Name=CV887373; organism=Citrus sinensis; type=EST; length=973bpback to top |