CV887373

Overview
NameCV887373
Unique NameCV887373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4417 contig Csv1_Contig4417:100..1073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.164e-66
Identity = 105/146 (71.92%), Postives = 116/146 (79.45%), Query Frame = -2
Query:  409 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 846
            FV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV              LKSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D AL EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct:   67 FVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212          

HSP 2 Score: 69.707 bits (169), Expect = 1.164e-66
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPGDKYKGTR N+GFEMID FAES GI MN V+ KA  GQG +
Sbjct:   25 GNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFV 68          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.277e-46
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = -2
Query:  406 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 843
            +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV              L++V+ +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK  R+
Sbjct:  111 IGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256          

HSP 2 Score: 57.7658 bits (138), Expect = 1.277e-46
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG+KY GTR NVGFEM+D  A  +GI+MNT+  K+  G G
Sbjct:   68 GNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIG 109          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.211e-45
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = -2
Query:  418 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 843
            + D P+LLAKPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV              +KSVM +  G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  +    FN +QKYK
Sbjct:   95 IEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYK 236          

HSP 2 Score: 59.3066 bits (142), Expect = 5.211e-45
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG+KY GTR NVGFEMID  A  +G+ MNT+  KA  G G +
Sbjct:   52 GNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAI 95          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.501e-44
Identity = 71/142 (50.00%), Postives = 97/142 (68.31%), Query Frame = -2
Query:  418 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 843
            +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GV              L++VM     +RE  RL IGIG PPG+MD +AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK
Sbjct:  114 IGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYK 255          

HSP 2 Score: 58.151 bits (139), Expect = 1.501e-44
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG KY GTR NVGFEM+D  A  +GI+MNT+  K+  G G
Sbjct:   71 GNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIG 112          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.629e-43
Identity = 72/142 (50.70%), Postives = 94/142 (66.20%), Query Frame = -2
Query:  418 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 843
            VG+ P+LL KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV              LK+V  +  G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G ++S   FN  QKYK
Sbjct:  101 VGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 242          

HSP 2 Score: 54.299 bits (129), Expect = 1.629e-43
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG KY GTR N+GFEMID  A +  ISMNT+  KA  G G
Sbjct:   58 GNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIG 99          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.354e-42
Identity = 64/139 (46.04%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  427 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 843
            +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP                 ++S++N+ + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E +D A   G+E ++++  +G  +SA + NT Q
Sbjct:  105 IGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243          

HSP 2 Score: 56.6102 bits (135), Expect = 1.354e-42
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG  Y+GTR NVGFEMID  AE++GIS++++  KA  G+G
Sbjct:   62 GNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 2.126e-30
Identity = 62/147 (42.18%), Postives = 97/147 (65.99%), Query Frame = -2
Query:  433 SLQSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 873
            + ++ F    +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G               ++S+++  +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  +SA   NT
Sbjct:  134 NFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNT 280          

HSP 2 Score: 69.3218 bits (168), Expect = 3.752e-11
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG KY+GTR NVGFEM+DA A+++GISMNTV+ KA FG+G++
Sbjct:  101 GNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVI 144          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.974e-28
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  697 QSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 867
            ++ F    V   PVLLAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGV
Sbjct:  102 KALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGV 158          

HSP 2 Score: 59.6918 bits (143), Expect = 3.974e-28
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG+KY+ TR NVGF+MID FA+SQGIS+     KA FG+G++
Sbjct:   67 GNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMV 110          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.006e-25
Identity = 48/131 (36.64%), Postives = 83/131 (63.36%), Query Frame = -2
Query:  451 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 843
            VGDAPV+LAKP +YMNLSG     L+A+YK+P++R++V HD++ +P                 L+S+  +  G+ ++ R+R+GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL ++
Sbjct:   84 VGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213          

HSP 2 Score: 36.5798 bits (83), Expect = 1.006e-25
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG KY G R NVGF ++D  A  +G
Sbjct:   41 GNPGPKYAGNRHNVGFMVVDELAAQRG 67          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCPA (Peptidyl-tRNA hydrolase OS=Mycobacterium paratuberculosis GN=pth PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.328e-23
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            V++AKP+ YMN SG   GPLA +Y +P   ++V HDD+ L  G               L+SV N   G+++F R+RIGIGRPPG+ DP AF+L+ F +  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVANAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181          

HSP 2 Score: 33.8834 bits (76), Expect = 4.328e-23
Identity = 15/27 (55.56%), Postives = 16/27 (59.26%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPGD Y  TR NVGF + D  A   G
Sbjct:   11 GNPGDNYARTRHNVGFMVADLLAARMG 37          
The following BLAST results are available for this feature:
BLAST of CV887373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTHM_ARATH1.164e-6671.92Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
CRS2_MAIZE1.277e-4650.00Chloroplastic group IIB intron splicing facilitato... [more]
CRS2B_ARATH5.211e-4548.59Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_ORYSJ1.501e-4450.00Chloroplastic group IIB intron splicing facilitato... [more]
CRS2A_ARATH1.629e-4350.70Chloroplastic group IIB intron splicing facilitato... [more]
PTHM_ORYSJ1.354e-4246.04Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
PTHC_ARATH2.126e-3042.18Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
CRS2L_ORYSJ3.974e-2875.44CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
PTH_THEFY1.006e-2536.64Peptidyl-tRNA hydrolase OS=Thermobifida fusca (str... [more]
PTH_MYCPA4.328e-2339.84Peptidyl-tRNA hydrolase OS=Mycobacterium paratuber... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887373 ID=CV887373; Name=CV887373; organism=Citrus sinensis; type=EST; length=973bp
TGCAATATACATAATATAATAAAGTACACCAAATTGCACAAAACATGATA
TTTATAGGCCAGCAACGAAAGCTATATCATAAATTCCTAGAGGATTGACT
GTTTTGCTTTCATAATGGTCAGACCTTCAGTTGGCTACGACCATGACACT
GGGAAAAGTCTCCAAATTTGAGAAGTGCTGATTTGCTGCAAAATGAACAG
ACAAAGCAATTCAGTTTGCTAATTGGGCTAAGCCATTCACTTACGTCGTT
AGAAGTATTCTCTCATTGGGATGGGTGGTTTCGCCTCCTCTCTCCTCGGT
GATTTTAAATATTTGTATGTATTATACAAATGCGGCCATGAAGAACCATT
CGGTGCTTTTGTGGTTGTCATCGAAGGTACCAATAGCTCATGCTGGCATG
TTTTGCAATCTTATGTGCTTGTATTTTTGTATGGTGTTGAAATGTCTAGC
ACTCTCTGTCAAGCCTTTAGATAAAAGCAGCTTCAGAACCTCAACCCCTT
CTTGCAAAGCAGTATCAATTCGCTCTCGAGCTATTGCATTAAACTTCTGC
AGCAAGAAAGCTTTAGGATCCATTTGACCAGGAGGCCTCCCAATACCAAT
TCTTAGCCGAGCAAATTCTCGGTTACCTCGAAAGTTGTTCATCACACTCT
TCAGCCCATTGTGGCCTCCATGACCTCCATTGTGGCGCAGACGAAGCACT
CCACAAGGTAAGCCCATGTCATCATGAAACACAAGAACACGATTAAGAGG
TAACTTATAATAAGCTGCAAGTGGTCCAGTAGATTCACCGCTCAGATTCA
TGTAAGTCTGTGGCTTTGCAAGGAGTACAGGGGCATCACCAACAAACCTT
GTCCGAAAGTAGCTTTGCAATGAACCGTGTTCATAGAAATCCCTTGTGAT
TCAGCAAATGCGTCGATCATCTCAAACCCCACATTGGGTCTAGTTCCTTT
GTATTTATCTCCCGGGTTACCCA
back to top