CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7349 contig Csv1_Contig7349:46..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.642e-69
Identity = 93/127 (73.23%), Postives = 102/127 (80.31%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSK 850
            FV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV               KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D AL E V+ LKL+L+K
Sbjct:   67 FVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAK 193          

HSP 2 Score: 99.3673 bits (246), Expect = 3.642e-69
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  276 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA  GQG +
Sbjct:    1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFV 68          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.736e-46
Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++ V+ ++ L+ KG
Sbjct:  111 IGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKG 237          

HSP 2 Score: 73.9442 bits (180), Expect = 6.736e-46
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G
Sbjct:   61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIG 109          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.535e-45
Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            + D P+LLAKPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM +  G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++  E +K L+  G
Sbjct:   95 IEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNG 221          

HSP 2 Score: 77.0258 bits (188), Expect = 2.535e-45
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3
Query:  324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G +
Sbjct:   45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAI 95          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.301e-45
Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP                  +S++N+ + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E +D A    +E ++++  +G
Sbjct:  105 IGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEG 231          

HSP 2 Score: 77.411 bits (189), Expect = 3.301e-45
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  321 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            +PWLFVGLGNPG  Y+GTRHNVGFEMID  AE++GIS++++  KA  G+G
Sbjct:   54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.577e-44
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GV               ++VM     +RE  RL IGIG PPG+MD +AFLLQKF++  R +IDTAL++ V+ ++ L+ KG
Sbjct:  114 IGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKG 240          

HSP 2 Score: 74.3294 bits (181), Expect = 3.577e-44
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            PWL  GLGNPG KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G
Sbjct:   64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIG 112          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.665e-44
Identity = 63/127 (49.61%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            VG+ P+LL KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  +  G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++ VE +K L+ +G
Sbjct:  101 VGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEG 227          

HSP 2 Score: 72.0182 bits (175), Expect = 4.665e-44
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G
Sbjct:   51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIG 99          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.247e-30
Identity = 47/128 (36.72%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            VGDAPV+LAKP +YMNLSG     L+A+YK+P++R++V HD++ +P                  +S+  +  G+ ++ R+R+GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL
Sbjct:   84 VGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGL 210          

HSP 2 Score: 51.2174 bits (121), Expect = 6.247e-30
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            WL VGLGNPG KY G RHNVGF ++D  A  +G
Sbjct:   35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRG 67          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.381e-27
Identity = 57/137 (41.61%), Postives = 90/137 (65.69%), Query Frame = 2
Query:  443 SLQSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            + ++ F    +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++  +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q  +E +++LL +G
Sbjct:  134 NFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEG 270          

HSP 2 Score: 87.0409 bits (214), Expect = 1.433e-16
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 3
Query:  324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G++
Sbjct:   94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVI 144          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCPA (Peptidyl-tRNA hydrolase OS=Mycobacterium paratuberculosis GN=pth PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.709e-27
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V++AKP+ YMN SG   GPLA +Y +P   ++V HDD+ L  G                +SV N   G+++F R+RIGIGRPPG+ DP AF+L+ F +  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVANAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181          

HSP 2 Score: 48.1358 bits (113), Expect = 2.709e-27
Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            +A P L VGLGNPGD Y  TRHNVGF + D  A   G
Sbjct:    1 MAEPLLVVGLGNPGDNYARTRHNVGFMVADLLAARMG 37          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCA1 (Peptidyl-tRNA hydrolase OS=Mycobacterium avium (strain 104) GN=pth PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.709e-27
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V++AKP+ YMN SG   GPLA +Y +P   ++V HDD+ L  G                +SV N   G+++F R+RIGIGRPPG+ DP AF+L+ F +  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVSNAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181          

HSP 2 Score: 48.1358 bits (113), Expect = 2.709e-27
Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            +A P L VGLGNPGD Y  TRHNVGF + D  A   G
Sbjct:    1 MAEPLLVVGLGNPGDNYARTRHNVGFMVADLLAARMG 37          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTHM_ARATH3.642e-6973.23Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
CRS2_MAIZE6.736e-4649.61Chloroplastic group IIB intron splicing facilitato... [more]
CRS2B_ARATH2.535e-4548.82Chloroplastic group IIB intron splicing facilitato... [more]
PTHM_ORYSJ3.301e-4545.67Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
CRS2_ORYSJ3.577e-4448.82Chloroplastic group IIB intron splicing facilitato... [more]
CRS2A_ARATH4.665e-4449.61Chloroplastic group IIB intron splicing facilitato... [more]
PTH_THEFY6.247e-3036.72Peptidyl-tRNA hydrolase OS=Thermobifida fusca (str... [more]
PTHC_ARATH1.381e-2741.61Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
PTH_MYCPA2.709e-2739.02Peptidyl-tRNA hydrolase OS=Mycobacterium paratuber... [more]
PTH_MYCA12.709e-2739.02Peptidyl-tRNA hydrolase OS=Mycobacterium avium (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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