CV887372
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 3.642e-69 Identity = 93/127 (73.23%), Postives = 102/127 (80.31%), Query Frame = 2 Query: 470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSK 850 FV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+ ARER+D AL E V+ LKL+L+K Sbjct: 67 FVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAK 193 HSP 2 Score: 99.3673 bits (246), Expect = 3.642e-69 Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 3 Query: 276 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 +++R RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA GQG + Sbjct: 1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFV 68
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 6.736e-46 Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ + G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++ V+ ++ L+ KG Sbjct: 111 IGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKG 237 HSP 2 Score: 73.9442 bits (180), Expect = 6.736e-46 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3 Query: 324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT+ K+ G G Sbjct: 61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIG 109
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.535e-45 Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 + D P+LLAKPQTYMN SGES G LA++Y++PL +L+ +D+M LP GV KSVM + G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++ E +K L+ G Sbjct: 95 IEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNG 221 HSP 2 Score: 77.0258 bits (188), Expect = 2.535e-45 Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 Query: 324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 PWL VGLGNPG+KY GTRHNVGFEMID A +G+ MNT+ KA G G + Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAI 95
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 3.301e-45 Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP +S++N+ + NR+F RLRIGIGRPPG+MDP F+L+ FN +E +D A +E ++++ +G Sbjct: 105 IGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEG 231 HSP 2 Score: 77.411 bits (189), Expect = 3.301e-45 Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 3 Query: 321 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 +PWLFVGLGNPG Y+GTRHNVGFEMID AE++GIS++++ KA G+G Sbjct: 54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.577e-44 Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL +LV +D+M LP GV ++VM +RE RL IGIG PPG+MD +AFLLQKF++ R +IDTAL++ V+ ++ L+ KG Sbjct: 114 IGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKG 240 HSP 2 Score: 74.3294 bits (181), Expect = 3.577e-44 Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 3 Query: 324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 PWL GLGNPG KY GTRHNVGFEM+D A +GI+MNT+ K+ G G Sbjct: 64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIG 112
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.665e-44 Identity = 63/127 (49.61%), Postives = 83/127 (65.35%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 VG+ P+LL KPQ YMN SGES GPLAAYY++PL +L+ +DDMGL GV K+V + G R + RL IGIG PPG MD KAFLLQKF+ + R+++D L++ VE +K L+ +G Sbjct: 101 VGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEG 227 HSP 2 Score: 72.0182 bits (175), Expect = 4.665e-44 Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 3 Query: 324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 PWL VGLGNPG KY GTRHN+GFEMID A + ISMNT+ KA G G Sbjct: 51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIG 99
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.247e-30 Identity = 47/128 (36.72%), Postives = 80/128 (62.50%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 VGDAPV+LAKP +YMNLSG L+A+YK+P++R++V HD++ +P +S+ + G+ ++ R+R+GIGRPPG+MD +F+LQ F+ R+ +D + + ++ +++ GL Sbjct: 84 VGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGL 210 HSP 2 Score: 51.2174 bits (121), Expect = 6.247e-30 Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 WL VGLGNPG KY G RHNVGF ++D A +G Sbjct: 35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRG 67
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 1.381e-27 Identity = 57/137 (41.61%), Postives = 90/137 (65.69%), Query Frame = 2 Query: 443 SLQSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 + ++ F +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G +S+++ +G+R+F RLRIGIGRPPG+MD F+L++FN +E +D Q +E +++LL +G Sbjct: 134 NFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEG 270 HSP 2 Score: 87.0409 bits (214), Expect = 1.433e-16 Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 3 Query: 324 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G++ Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVI 144
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCPA (Peptidyl-tRNA hydrolase OS=Mycobacterium paratuberculosis GN=pth PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.709e-27 Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 V++AKP+ YMN SG GPLA +Y +P ++V HDD+ L G +SV N G+++F R+RIGIGRPPG+ DP AF+L+ F + R + T ++ + +LL+ GL Sbjct: 60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVANAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181 HSP 2 Score: 48.1358 bits (113), Expect = 2.709e-27 Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 +A P L VGLGNPGD Y TRHNVGF + D A G Sbjct: 1 MAEPLLVVGLGNPGDNYARTRHNVGFMVADLLAARMG 37
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCA1 (Peptidyl-tRNA hydrolase OS=Mycobacterium avium (strain 104) GN=pth PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.709e-27 Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 V++AKP+ YMN SG GPLA +Y +P ++V HDD+ L G +SV N G+++F R+RIGIGRPPG+ DP AF+L+ F + R + T ++ + +LL+ GL Sbjct: 60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVSNAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181 HSP 2 Score: 48.1358 bits (113), Expect = 2.709e-27 Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 +A P L VGLGNPGD Y TRHNVGF + D A G Sbjct: 1 MAEPLLVVGLGNPGDNYARTRHNVGFMVADLLAARMG 37 The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bpback to top |