CV887369

Overview
NameCV887369
Unique NameCV887369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887369 vs. ExPASy Swiss-Prot
Match: CNDH2_XENLA (Condensin-2 complex subunit H2 OS=Xenopus laevis GN=ncaph2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   70 SDVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHALEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKN 447
            ++ RFT  +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NFAEAALL+QGS  +YS+KVEYLY+LV  AL+FIS K +  Q        E+  +      + + F   DD+  +  N
Sbjct:    4 AESRFTHLLQPVRDLTKNWEVDVAAQLGEYLEEL--DQICISFDGGKTTMNFAEAALLIQGSACIYSKKVEYLYSLVYQALDFISNKKRVQQPTSVGADGEDKDATFAHRNDEEEFLSLDDIDSKKTN 129          
BLAST of CV887369 vs. ExPASy Swiss-Prot
Match: CNDH2_XENTR (Condensin-2 complex subunit H2 OS=Xenopus tropicalis GN=ncaph2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   70 SDVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHALEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDV 429
            ++ RFT  +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NFAEAALL+QGS  +YS+KVEYLY+LV  AL+FIS K +  Q         +  +      + + F   DD+
Sbjct:    4 AESRFTHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDGGKTTMNFAEAALLIQGSACIYSKKVEYLYSLVYQALDFISNKKRDQQPASVGADGVDKDATFAHRNDEEEFLSLDDI 123          
BLAST of CV887369 vs. ExPASy Swiss-Prot
Match: CNDH2_HUMAN (Condensin-2 complex subunit H2 OS=Homo sapiens GN=NCAPH2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   88 VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHALEFISQKSQQDQIEGTPV-QAEESGSHAVAGEENDFFWGFDDVP-----VEVKN 447
            +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QGS  VYS+KVEYLY+LV  AL+FIS K +  Q+      +A    S  V  E  + F   DD P     V++KN
Sbjct:   12 LQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLSLDDFPDSRTNVDLKN 135          
BLAST of CV887369 vs. ExPASy Swiss-Prot
Match: CNDH2_MOUSE (Condensin-2 complex subunit H2 OS=Mus musculus GN=Ncaph2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   73 DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHALEFISQKSQQDQIEGTPVQAEESGSHAVAGEE-----NDFFWGFDDVP-----VEVKN 447
            +VRF   +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QGS  VYS+KVEYLY+LV  AL+FIS K +  Q+       +E GS      E      + F   DD P     V++KN
Sbjct:    5 EVRFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLS----LVQEDGSKKTVNSETPCETENEFLSLDDFPDSRANVDLKN 135          
BLAST of CV887369 vs. ExPASy Swiss-Prot
Match: CNDH2_BOVIN (Condensin-2 complex subunit H2 OS=Bos taurus GN=NCAPH2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   94 PERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHALEFISQKSQQDQIEGTPVQAEESGSHAVAGEE-NDFFWGFDDV 429
            P R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QGS  VYS+KVEYLY+LV  AL+FIS K Q  Q+  TP       + + A +E    F   DD+
Sbjct:   14 PIRDLTRNWEVDVAAQLGEYLEEL--DQICISFDKGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKKQAKQLSSTPEDGTIGDASSRAPQEAEQKFRALDDL 124          
BLAST of CV887369 vs. ExPASy Swiss-Prot
Match: CNDH2_DANRE (Condensin-2 complex subunit H2 OS=Danio rerio GN=ncaph2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   88 VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHALEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTS--LNLFVKPPANLVVLE 525
            +QP R+L  NW++DLA +L +YL ++   Q+T S       +NFAEAALL+QGS  +Y RKVE L+ LV   L++IS K+++   +G+   ++ +   A +G E D    FD++  +      +   KD +  + +   PP +L+  E
Sbjct:   12 LQPLRDLTKNWDIDLASQLGEYLEEL--DQMTISFDGGKTMMNFAEAALLIQGSTCIYGRKVELLHTLVFQTLDYISNKNKKRDKQGS--SSDGNQEQAPSGSEGD-GCEFDEIEQDENVNTHNITMKDPTEPVRIIRLPPESLIPAE 154          
The following BLAST results are available for this feature:
BLAST of CV887369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CNDH2_XENLA2.835e-1739.84Condensin-2 complex subunit H2 OS=Xenopus laevis G... [more]
CNDH2_XENTR1.838e-1640.16Condensin-2 complex subunit H2 OS=Xenopus tropical... [more]
CNDH2_HUMAN1.838e-1642.86Condensin-2 complex subunit H2 OS=Homo sapiens GN=... [more]
CNDH2_MOUSE4.094e-1641.61Condensin-2 complex subunit H2 OS=Mus musculus GN=... [more]
CNDH2_BOVIN4.094e-1644.25Condensin-2 complex subunit H2 OS=Bos taurus GN=NC... [more]
CNDH2_DANRE3.832e-1434.46Condensin-2 complex subunit H2 OS=Danio rerio GN=n... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887369 ID=CV887369; Name=CV887369; organism=Citrus sinensis; type=EST; length=848bp
CATCATCTGTTAATCATGAATAAAGGAGCCAAAAACAGCCAGGCGGAGGC
GGAGGCGGCGGCGGGAGGCAGCGATGTCAGGTTTACGGTGCAGCCGGAGC
GCGAGCTACAAGCCAATTGGGAAGTTGACTTGGCGAAGAAGCTCGAAGAC
TATCTCTTAAAGATTTGCTCCGGTCAAGTTACCGCCTCTGAAAGTCTCGA
CAGCATTTCTGTCAATTTCGCCGAAGCTGCTTTGCTAGTTCAGGGCTCGG
TTCAAGTGTATAGCAGAAAAGTTGAATATTTGTACAATTTGGTTTTGCAC
GCTTTGGAGTTTATTTCTCAGAAGAGCCAGCAGGATCAAATAGAGGGCAC
ACCAGTCCAGGCTGAAGAAAGTGGATCCCATGCAGTTGCTGGGGAAGAAA
ATGATTTCTTTTGGGGCTTTGATGACGTCCCAGTGGAAGTAAAAAATTGC
TTGGACAGTCCAAATGGAAAGGATACTTCCTTGAATCTCTTTGTGAAGCC
CCCTGCAAATTTAGTTGTTCTTGAAGGTGATTGCTTGGACACTGTTGGTG
ATGGCACGGAGTTAGAGTCCTATCTGTTAGCCACCAGTGATCTTTACCGG
GATTTTATTCTATTAGATACATATGATTCTGTAGCAGTTGATGATTTTTT
AGAGGGAGATGAAGTTTGTAAAGGGCCAAATGATGTCTACAGGGGCAGCT
CAACTCGCAAAAGCTTTCAGTCTCCCACAAGACGTTCAGGAGGTACTGCA
CATAAGTCTTCTCTTGCAAAGAACAAAGATGTCAATCTCCCGGCTTCACC
TAGAGTTGCTTGCAGTTTTGATGTGGGGCCCAATCCTCCTGTCAATGA
back to top