CV887368

Overview
NameCV887368
Unique NameCV887368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV887368 vs. ExPASy Swiss-Prot
Match: CNDH2_BOVIN (Condensin-2 complex subunit H2 OS=Bos taurus GN=NCAPH2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 39/120 (32.50%), Postives = 64/120 (53.33%), Query Frame = -2 
Query:  534 ETEKQTELVARVSSWKQKMRNNLDEQDSHPPFDIHEYGESIINKLSFEGDNGNITSFADVVKGQHKYDVARTFSALLQLVNNGDVDLDRRGEQSESICYTAVNPFYVRLLNHERKRGETQ 893
            E  ++TEL   +  W+  +++ L EQ+ H PFDIH YG+ ++++ S          FA +V GQ  ++V R+  A LQL N+  V++ ++          AV+   +RLL H+R R   Q
Sbjct:  501 ELVQETELKQHIRGWEDAIQSLLQEQEEHVPFDIHTYGDQVVSRFS---QLNQWCPFAKLVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLE-----AAVDTMSLRLLTHQRARQRFQ 612
The following BLAST results are available for this feature:
BLAST of CV887368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CNDH2_BOVIN5.709e-1132.50Condensin-2 complex subunit H2 OS=Bos taurus GN=NC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887368 ID=CV887368; Name=CV887368; organism=Citrus sinensis; type=EST; length=900bp
GGGGCTTCAACTATTAGTCTGACCAGCAAATACGAATCGATTGTGAGCAT
GATATACATAGTACAAGAACTTGATCATTCTACAAGTAAAAAAGTACTTC
TAGTTACAAGGTTTCTAAACTGATAAGTGATAACGAAAGGCCTAGAATAA
GTTACATTGATAAAAAAAAAGAAGATACAACTAATTGTCAATAACATAGA
ATTACAATGAAGTTAATTCTATAATCTGCTTTTGAGTCATCCAATTGGGT
AGTTGAATTTGCCCAATGATTTAGGACTGACCCGACTCGGTCAACCTGAT
GAATGTAAGTCAACCGGTTCAACCAATCGAGACCTTCGTCTCCTCTTGCC
CTCAGGAGTGCATCTTACCCCTCCAAGCTTTCCAAGCTTCATAGAGAAGT
TACAACTTGGTTGTGATGACACCGCTGAAGATCCATATCCCGATGATGGA
TTGTCAATTGGAGACTTCTCTCTGTCACCTTTGCTAGGTCCTTTTCTTGA
TGGAGATTTAAGCCTCTTTTTTGGTAATCGGAATTGTGTTTCGCCTCGCT
TTCTCTCATGGTTGAGCAGCCGAACATAAAAAGGATTCACTGCCGTATAA
CAAATGGACTCACTCTGCTCCCCTCTCCTATCCAAATCTACATCTCCATT
GTTCACCAACTGAAGGAGTGCAGAAAATGTTCGAGCCACATCATACTTAT
GCTGGCCCTTCACAACATCAGCAAAGGATGTGATATTTCCATTGTCTCCT
TCAAATGATAGCTTATTAATAATACTTTCTCCATATTCATGAATATCAAA
TGGAGGGTGCGAATCTTGCTCATCCAAGTTGTTTCTCATTTTCTGTTTCC
AGGATGAAACTCGAGCAACCAATTCTGTCTGCTTCTCGGTTTCAGCTATA
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