CV887367

Overview
NameCV887367
Unique NameCV887367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:449..1248. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887367 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 421.394 bits (1082), Expect = 2.875e-117
Identity = 204/236 (86.44%), Postives = 225/236 (95.34%), Query Frame = -2
Query:   92 QIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTHF 799
            QIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAG KQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLASKPEGTGTPTKDFKALF+Q+TT F
Sbjct:   90 QIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325          
BLAST of CV887367 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.697e-107
Identity = 190/236 (80.51%), Postives = 210/236 (88.98%), Query Frame = -2
Query:   92 QIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTHF 799
            QIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AG K IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKALFSQ+T+ F
Sbjct:   18 QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253          
BLAST of CV887367 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  104 AKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQI 583
            A G RP F   +   P +VD  G  N +DA +  G ++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+ FK  ++ ++ E    P + +K LF+ +
Sbjct:  121 ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEESSFKVVEIVARAE---APKRSYKDLFASV 277          
The following BLAST results are available for this feature:
BLAST of CV887367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH2.875e-11786.44Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH2.697e-10780.51Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH1.626e-1133.53Uncharacterized protein At2g34460, chloroplastic O... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887367 ID=CV887367; Name=CV887367; organism=Citrus sinensis; type=EST; length=800bp
TCGGCATTCATTTATTCATTCCCCTTTTTAATACAAGGCATTACAGTTTT
CTAACATAAAAACTCAGGAGGAGAATGGCGACTGAGACTCAGAAATGAGT
AGTAATTTGAGAAAAGAGAGCTTTAAAATCCTTTGTGGGTGTGCCAGTTC
CCTCAGGCTTTGAGGCCAGATCAAATGCCTTAAATTTGGCCTCCTCAAAC
TGTAGTGCCTGAATGCAGACTTCGGCAACATCGGCCCTGGCAATTGTCCT
TGTTTCTGTCTGAAGAAGTTCATCATCCTTACCGACAAGTAATTCTCGGA
TACCACCTTCTTTATCCTGAAGGCCTCCGGCCCTTATAATTGTGTATGGA
ATACCAGAGTCAGCCAAATACTGCTCAGCCTTTCTTTTCCAAACCAATAT
ATTGCCATTGCCCAAACTGTTCAAGGGATGATTAAGATTTGTTCCTCCCA
TCGATCCAACCAACACAATTTGCTTCGCTCCAGCAGCCTTAGCAGCATCA
ATTTGATTTTTCTGACCAATCCAATCAACCTGTTCAGGATATGCACCCTC
TTCAAAGTAGAACTCAGGCCTTCCACCTTTGGCAGGATCAAAATCAGGTT
TCATCTTTGGTACTGCACTTGTGAGAATTATGAGAGCATCGATTCCTTGG
ATTGCAGGAATGATGCTATTAGAGTCCCTTATGTCACCAATAAAAAGATC
ATCAGCTCCGCCAATTTTCTGCTTGCTCTCCTCAGTTCTGACCAAACCTC
TAGCAGCATATTGCTCTGACCTCTCCTTTAATTTCTTATAAACTATTTGA
back to top