CV887366

Overview
NameCV887366
Unique NameCV887366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:373..1210. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887366 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 444.506 bits (1142), Expect = 3.424e-124
Identity = 216/248 (87.10%), Postives = 237/248 (95.56%), Query Frame = 3
Query:   42 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTHF 785
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAG KQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLASKPEGTGTPTKDFKALF+Q+TT F
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325          
BLAST of CV887366 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.594e-113
Identity = 201/248 (81.05%), Postives = 221/248 (89.11%), Query Frame = 3
Query:   42 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTHF 785
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AG K IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKALFSQ+T+ F
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253          
BLAST of CV887366 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.299e-14
Identity = 80/268 (29.85%), Postives = 129/268 (48.13%), Query Frame = 3
Query:    3 KTEAVKVLSMAKSTVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADD----LFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQI 773
            K EA   +   K  V V GA G+TG+ + ++L  R   +A +  VR  E K K    DD    +   D+ +    +  + G D+  ++             A G RP F   +   P +VD  G  N +DA +  G ++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+ FK  ++ ++ E    P + +K LF+ +
Sbjct:   37 KGEAENAVKTKK--VFVAGATGQTGKRIVEQLLSRG--FAVKAGVRDVE-KAKTSFKDDPSLQIVRADVTEGPDKLAEVIGDDSQAVIC------------ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEESSFKVVEIVARAE---APKRSYKDLFASV 277          
The following BLAST results are available for this feature:
BLAST of CV887366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH3.424e-12487.10Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH1.594e-11381.05Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH1.299e-1429.85Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887366 ID=CV887366; Name=CV887366; organism=Citrus sinensis; type=EST; length=838bp
GTAAAACCGAAGCAGTCAAAGTTTTATCGATGGCTAAGAGTACCGTTCTT
GTCACCGGCGCTGGTGGTCGAACCGGTCAAATAGTTTATAAGAAATTAAA
GGAGAGGTCAGAGCAATATGCTGCTAGAGGTTTGGTCAGAACTGAGGAGA
GCAAGCAGAAAATTGGCGGAGCTGATGATCTTTTTATTGGTGACATAAGG
GACTCTAATAGCATCATTCCTGCAATCCAAGGAATCGATGCTCTCATAAT
TCTCACAAGTGCAGTACCAAAGATGAAACCTGATTTTGATCCTGCCAAAG
GTGGAAGGCCTGAGTTCTACTTTGAAGAGGGTGCATATCCTGAACAGGTT
GATTGGATTGGTCAGAAAAATCAAATTGATGCTGCTAAGGCTGCTGGAGC
GAAGCAAATTGTGTTGGTTGGATCGATGGGAGGAACAAATCTTAATCATC
CCTTGAACAGTTTGGGCAATGGCAATATATTGGTTTGGAAAAGAAAGGCT
GAGCAGTATTTGGCTGACTCTGGTATTCCATACACAATTATAAGGGCCGG
AGGCCTTCAGGATAAAGAAGGTGGTATCCGAGAATTACTTGTCGGTAAGG
ATGATGAACTTCTTCAGACAGAAACAAGGACAATTGCCAGGGCCGATGTT
GCCGAAGTCTGCATTCAGGCACTACAGTTTGAGGAGGCCAAATTTAAGGC
ATTTGATCTGGCCTCAAAGCCTGAGGGAACTGGCACACCCACAAAGGATT
TTAAAGCTCTCTTTTCTCAAATTACTACTCATTTCTGAGTCTCAGTCGCC
ATTCTCCTCCTGAGTTTTTATGTTAGAAAACTGTAATG
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