CV887365
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.790e-32 Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3 Query: 15 QLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 221 +LDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD Sbjct: 18 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.418e-29 Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 3 Query: 15 QLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 236 +LDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN EDD E+ Sbjct: 18 KLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16 Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 15 QLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 209 +LDT F+C FCNH SV C +D KN IG C IC +SF T I +L++P+D+YS+W D E VN+ Sbjct: 18 KLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.165e-15 Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 18 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 209 LDT F+CPFCNH E ++D + +G C +C E F T I L+EPID+YS+W+D CE+ NN Sbjct: 20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.428e-15 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 3 Query: 3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 230 R + LDT F+C FCNH SV C +D ++ +G C IC +S ITAL+ PID+YS+WID C+ V+N+ D AY Sbjct: 14 RRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206 + +G L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 15 KMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206 + +G L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 15 KMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206 + +G L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 15 KMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 18 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206 LD F+CPFCNH S E ++D + C +C E F T I L+EPID+Y++W+D CE N Sbjct: 20 LDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.070e-13 Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 3 Query: 3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206 +A LD F+CPFCNH S E ++D C +C E F TT L+EPID+Y++W+D CE N Sbjct: 15 KAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82 The following BLAST results are available for this feature:
BLAST of CV887365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV887365 ID=CV887365; Name=CV887365; organism=Citrus sinensis; type=EST; length=445bpback to top |