CV887365

Overview
NameCV887365
Unique NameCV887365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2018 contig Csv1_Contig2018:158..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.790e-32
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3
Query:   15 QLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 221
            +LDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   18 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.418e-29
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 3
Query:   15 QLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 236
            +LDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN  EDD   E+
Sbjct:   18 KLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   15 QLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 209
            +LDT F+C FCNH  SV C +D KN IG   C IC +SF T I +L++P+D+YS+W D  E VN+
Sbjct:   18 KLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.165e-15
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   18 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 209
            LDT F+CPFCNH    E ++D +  +G   C +C E F T I  L+EPID+YS+W+D CE+ NN
Sbjct:   20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.428e-15
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 3
Query:    3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 230
            R +  LDT F+C FCNH  SV C +D ++ +G   C IC +S    ITAL+ PID+YS+WID C+        V+N+ D  AY
Sbjct:   14 RRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3
Query:    3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206
            + +G L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   15 KMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3
Query:    3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206
            + +G L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   15 KMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3
Query:    3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206
            + +G L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   15 KMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 3
Query:   18 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206
            LD  F+CPFCNH  S E ++D      +  C +C E F T I  L+EPID+Y++W+D CE  N
Sbjct:   20 LDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82          
BLAST of CV887365 vs. ExPASy Swiss-Prot
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.070e-13
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 3
Query:    3 RASGQLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 206
            +A   LD  F+CPFCNH  S E ++D         C +C E F TT   L+EPID+Y++W+D CE  N
Sbjct:   15 KAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82          
The following BLAST results are available for this feature:
BLAST of CV887365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ELOF1_ORYSJ1.790e-3288.41Transcription elongation factor 1 homolog OS=Oryza... [more]
ELOF1_ARATH1.418e-2978.38Transcription elongation factor 1 homolog OS=Arabi... [more]
ELF1_YEAST8.923e-1652.31Transcription elongation factor 1 OS=Saccharomyces... [more]
ELOF1_CAEEL1.165e-1550.00Transcription elongation factor 1 homolog OS=Caeno... [more]
ELOF1_SCHPO4.428e-1544.58Transcription elongation factor 1 homolog OS=Schiz... [more]
ELOF1_MOUSE5.784e-1547.06Transcription elongation factor 1 homolog OS=Mus m... [more]
ELOF1_HUMAN5.784e-1547.06Transcription elongation factor 1 homolog OS=Homo ... [more]
ELOF1_BOVIN5.784e-1547.06Transcription elongation factor 1 homolog OS=Bos t... [more]
ELOF1_DROME4.145e-1346.03Transcription elongation factor 1 homolog OS=Droso... [more]
ELOF1_MANSE7.070e-1344.12Transcription elongation factor 1 homolog OS=Mandu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887365 ID=CV887365; Name=CV887365; organism=Citrus sinensis; type=EST; length=445bp
CCAGAGCGAGTGGACAGCTTGACACTGTCTTCAGTTGTCCCTTCTGTAAC
CATGGCACCAGTGTTGAGTGCCGCATTGATATGAAGAACTTGATTGGCGA
AGCTATATGCAATATATGCCAAGAGAGCTTCAGCACTACTATCACAGCTT
TAACTGAACCAATAGACATATATAGTGAATGGATTGATGAATGTGAACGG
GTTAACAACCTTGAAGATGACGGTGCTTATGAGAAAGCTTGATGTCTCCT
GTACTAACGTCGGTGTTTGAATCTCTGTTTATGAGAAAGCTTGATGTCTC
CTGTACCAACATCGGTGTTTGAATCTCTAGTGGATGTAATTATATCTGTT
CACAGAGTAGTGCTCATTTACATCTGTAGACTATCTCAGGTTATGTTGCT
AACTGATGTTGTGTAATTGGATGCTATTAATGCAGTTGTAATCCT
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