CV887364
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 4.317e-37 Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = -1 Query: 222 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 449 PPKKR+DKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD Sbjct: 11 PPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.100e-32 Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = -1 Query: 207 PKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 446 P KR+DKLDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN EDD E+ Sbjct: 12 PTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18 Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = -1 Query: 234 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 449 P K+ V KLDT F+C FCNH SV C +D KN IG C IC +SF T I +L++P+D+YS+W D E VN+ Sbjct: 11 PTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = -1 Query: 213 PKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 446 PK+R LDT F+C FCNH SV C +D ++ +G C IC +S ITAL+ PID+YS+WID C+ V+N+ D AY Sbjct: 12 PKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.201e-16 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = -1 Query: 234 KRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 440 K V LDT F+CPFCNH E ++D + +G C +C E F T I L+EPID+YS+W+D CE+ NN Sbjct: 15 KAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15 Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = -1 Query: 237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449 P KK L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 12 PKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15 Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = -1 Query: 237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449 P KK L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 12 PKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15 Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = -1 Query: 237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449 P KK L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 12 PKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15 Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = -1 Query: 237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449 P +K ++ LD F+CPFCNH S E ++D + C +C E F T I L+EPID+Y++W+D CE N Sbjct: 12 PKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = -1 Query: 237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449 P +K ++ LD F+CPFCNH S E ++D C +C E F TT L+EPID+Y++W+D CE N Sbjct: 12 PKRKAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82 The following BLAST results are available for this feature:
BLAST of CV887364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887364 ID=CV887364; Name=CV887364; organism=Citrus sinensis; type=EST; length=449bpback to top |