CV887364

Overview
NameCV887364
Unique NameCV887364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2018 contig Csv1_Contig2018:151..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.317e-37
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = -1
Query:  222 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 449
            PPKKR+DKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   11 PPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.100e-32
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = -1
Query:  207 PKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 446
            P KR+DKLDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN  EDD   E+
Sbjct:   12 PTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  234 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 449
            P K+ V KLDT F+C FCNH  SV C +D KN IG   C IC +SF T I +L++P+D+YS+W D  E VN+
Sbjct:   11 PTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = -1
Query:  213 PKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 446
            PK+R   LDT F+C FCNH  SV C +D ++ +G   C IC +S    ITAL+ PID+YS+WID C+        V+N+ D  AY
Sbjct:   12 PKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.201e-16
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = -1
Query:  234 KRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 440
            K V  LDT F+CPFCNH    E ++D +  +G   C +C E F T I  L+EPID+YS+W+D CE+ NN
Sbjct:   15 KAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = -1
Query:  237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449
            P KK    L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   12 PKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = -1
Query:  237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449
            P KK    L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   12 PKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = -1
Query:  237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449
            P KK    L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   12 PKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = -1
Query:  237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449
            P +K ++ LD  F+CPFCNH  S E ++D      +  C +C E F T I  L+EPID+Y++W+D CE  N
Sbjct:   12 PKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82          
BLAST of CV887364 vs. ExPASy Swiss-Prot
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = -1
Query:  237 PPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 449
            P +K ++ LD  F+CPFCNH  S E ++D         C +C E F TT   L+EPID+Y++W+D CE  N
Sbjct:   12 PKRKAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82          
The following BLAST results are available for this feature:
BLAST of CV887364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ELOF1_ORYSJ4.317e-3789.47Transcription elongation factor 1 homolog OS=Oryza... [more]
ELOF1_ARATH1.100e-3278.75Transcription elongation factor 1 homolog OS=Arabi... [more]
ELF1_YEAST5.862e-1852.78Transcription elongation factor 1 OS=Saccharomyces... [more]
ELOF1_SCHPO8.464e-1745.88Transcription elongation factor 1 homolog OS=Schiz... [more]
ELOF1_CAEEL4.201e-1649.28Transcription elongation factor 1 homolog OS=Caeno... [more]
ELOF1_MOUSE1.222e-1547.89Transcription elongation factor 1 homolog OS=Mus m... [more]
ELOF1_HUMAN1.222e-1547.89Transcription elongation factor 1 homolog OS=Homo ... [more]
ELOF1_BOVIN1.222e-1547.89Transcription elongation factor 1 homolog OS=Bos t... [more]
ELOF1_DROME4.644e-1543.66Transcription elongation factor 1 homolog OS=Droso... [more]
ELOF1_MANSE1.351e-1443.66Transcription elongation factor 1 homolog OS=Mandu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887364 ID=CV887364; Name=CV887364; organism=Citrus sinensis; type=EST; length=449bp
ATTACAACTGCATTAATAGCATCCAATTACACAACATCAGTTAGCAACAT
AACCTGAGATAGTCTACAGATGTAAATGAGCACTACTCTGTGAACAGATA
TAATTACATCCACTAGAGATTCAAACACCGATGTTGGTACAGGAGACATC
AAGCTTTCTCATAAACAGAGATTCAAACACCGACGTTAGTACAGGAGACA
TCAAGCTTTCTCATAAGCACCGTCATCTTCAAGGTTGTTAACCCGTTCAC
ATTCATCAATCCATTCACTATATATGTCTATTGGTTCAGTTAAAGCTGTG
ATAGTAGTGCTGAAGCTCTCTTGGCATATATTGCATATAGCTTCGCCAAT
CAAGTTCTTCATATCAATGCGGCACTCAACACTGGTGCCATGGTTACAGA
AGGGACAACTGAAGACAGTGTCAAGCTTGTCCACTCGCTTCTTGGGTGG
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