CV887357

Overview
NameCV887357
Unique NameCV887357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 1.138e-102
Identity = 184/191 (96.34%), Postives = 189/191 (98.95%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGVLKPGMVVTFGPSGLTTEVKSV MHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  246 GIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.065e-100
Identity = 179/191 (93.72%), Postives = 188/191 (98.43%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGVLKPGMVVTFGP+GLTTEVKSV MHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNV+KKDPTG
Sbjct:  246 GIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.817e-100
Identity = 179/191 (93.72%), Postives = 187/191 (97.91%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSV MHHEALQEALPGDNVGFNVKNVAVKDLKRG+VAS SKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  246 GIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 9.017e-100
Identity = 178/191 (93.19%), Postives = 186/191 (97.38%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETG+LKPGMVVTFGP+GLTTEVKSV MHHEALQEALPGDNVGFNVKNVAVKDLKRG VASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  246 GIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 9.017e-100
Identity = 178/191 (93.19%), Postives = 185/191 (96.86%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGV+KPGMVVTFGPSGLTTEVKSV MHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  246 GIGTVPVGRVETGVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.538e-99
Identity = 175/191 (91.62%), Postives = 188/191 (98.43%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSV MHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+KNV+KKDPTG
Sbjct:  246 GIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 3.427e-99
Identity = 176/191 (92.15%), Postives = 186/191 (97.38%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIG  PVGRVETGV+KPGM+VTF P+GLTTEVKSV MHHEAL EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  246 GIGIVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 359.762 bits (922), Expect = 1.302e-98
Identity = 176/191 (92.15%), Postives = 185/191 (96.86%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGVLKPGMVVTF P+GLTTEVKSV MHHE+L EA PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  246 GIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 2.221e-98
Identity = 177/191 (92.67%), Postives = 184/191 (96.34%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSV MHHE+L EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK VEKKDPTG
Sbjct:  246 GIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTG 436
[Close]
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.102e-97
Identity = 173/191 (90.58%), Postives = 185/191 (96.86%), Query Frame = -1 
Query:  358 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 930
            GIGT PVGRVETG++KPGMVVTF P+GLTTEVKSV MHHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  246 GIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
The following BLAST results are available for this feature:
BLAST of CV887357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.138e-10296.34Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC1.065e-10093.72Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MAIZE1.817e-10093.72Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES9.017e-10093.19Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA9.017e-10093.19Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_SOLLC1.538e-9991.62Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_VICFA3.427e-9992.15Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_SOYBN1.302e-9892.15Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_WHEAT2.221e-9892.67Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ARATH1.102e-9790.58Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030G09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887357 ID=CV887357; Name=CV887357; organism=Citrus sinensis; type=EST; length=930bp
CGAAAGTAGATATCAATTCCGCAGAAACAACACAATGACAAAACTTCTGA
GCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATACAAACAAAGAC
CATAACTATTAATAAAATTGAGACTCCAGGTTAGAGCTGCGCCACCGCCT
GTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAAAGGCAACAAAC
TAAAACCTAAAAAGGAAAGCATGCATCGAACTATAACAGTACCAAAAATA
ACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCATCTGCGGATAA
AGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGCAGACTTGGTGA
CCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACA
GCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTA
GTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCA
TTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTG
CCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAAT
GTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGC
CAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTG
GCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTT
GACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGGGCCT
CCTGCAGAGCTTCGTGGTGCATCTNCACAGACTTAACCTCAGTTGTCAAT
CCAGAGGGGCCAAATGTCACCACCATACCAGGCTTGAGGACACCGGTCTC
AACGCGACCCACTGGGAACGTTCCAATGCC
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