EL492524

Overview
NameEL492524
Unique NameEL492524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length183
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10893 contig Csv1_Contig10893:218..400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.413e-24
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   18 EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            + FHWQATIMGP DSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI  + S
Sbjct:   29 DMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 3
Query:   18 EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            + FHWQATIMGPP+SPYAGGVFLVSIHFPPDYPFKPPKV+F+TKV+HPNI  + S
Sbjct:   29 DMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.694e-23
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   18 EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            + FHWQATIMGP DSPY+GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNI  + S
Sbjct:   29 DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-23
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   18 EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            + FHWQATIMGP DSPY+GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPN+  + S
Sbjct:   29 DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-23
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   18 EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            + FHWQATIMGP +SPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNI  + S
Sbjct:   29 DMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   18 EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            + FHWQATIMGP +SPY+GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNI  + S
Sbjct:   29 DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:    3 GGRG*EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            G  G + F WQATIMGP DSP+AGGVFLV+IHFPPDYPFKPPKVAFRTKV+HPNI  + S
Sbjct:   24 GPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 3
Query:    3 GGRG*EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            G  G + FHWQATIMGP +SPY+GGVFLV+IHFPPDYPFKPPKV FRTKVFHPNI  + +
Sbjct:   24 GPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGN 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.532e-21
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 GGRG*EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            G  G + FHWQATIMGPPDSPY GGVF ++IHFP DYPFKPPKVAF T+++HPNI  + S
Sbjct:   24 GPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS 83          
BLAST of EL492524 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.028e-20
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 GGRG*EWFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNITQDSS 182
            G  G + FHWQATIMGPP+SPY GGVF ++IHFP DYPFKPPKVAF T+++HPNI  + S
Sbjct:   24 GPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS 83          
The following BLAST results are available for this feature:
BLAST of EL492524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UBC4_SOLLC3.413e-2487.27Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH1.297e-2381.82Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC9_ARATH1.694e-2383.64SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH2.212e-2381.82Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH2.212e-2383.64Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH4.928e-2381.82Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH1.098e-2276.67Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH1.098e-2275.00Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBCD1_DROME3.532e-2170.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CAEEL1.028e-2068.33Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionC2060 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2060, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492524 ID=EL492524; Name=EL492524; organism=Citrus sinensis; type=EST; length=183bp
CGGGCGGTCGGGGCTGAGAATGGTTTCATTGGCAAGCAACCATAATGGGC
CCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCTAGTTTCAATCCATTT
CCCTCCTGATTATCCATTCAAACCACCTAAGGTCGCGTTTAGGACCAAGG
TTTTTCACCCAAATATTACTCAGGACTCATCAA
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