EL492523

Overview
NameEL492523
Unique NameEL492523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length203
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4547 contig Csv1_Contig4547:401..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.130e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            YEGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTI +
Sbjct:  110 YEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKE 160          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.366e-20
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTI +
Sbjct:  109 YEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKE 159          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.783e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            +EGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTI +
Sbjct:  110 FEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKE 160          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.329e-20
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            +EG+P PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTI +
Sbjct:  110 FEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKE 160          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.329e-20
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            +EGVP PYDK KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTI +
Sbjct:  110 FEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKE 160          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.363e-19
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTIT+
Sbjct:  110 FEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITE 160          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.573e-15
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRLSSEVGW Y D +++
Sbjct:  107 FEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSR 157          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.910e-14
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   40 YEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            +EGVP PYDK KRMVIP AL+VLRL+ G K+C+LGRL++EVGW + D +T+
Sbjct:  104 FEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTR 154          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.112e-13
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   43 EGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D +++
Sbjct:  107 EGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSK 156          
BLAST of EL492523 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.758e-13
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:   43 EGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTITQ 192
            EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +
Sbjct:  107 EGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAK 156          
The following BLAST results are available for this feature:
BLAST of EL492523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
R13A4_ARATH6.130e-2188.2460S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
RL13A_LUPLU1.366e-2082.3560S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
R13A2_ARATH1.783e-2086.2760S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A3_ARATH2.329e-2084.3160S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A1_ARATH2.329e-2084.3160S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
RL13A_PICMA3.363e-1980.3960S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL16_NEUCR8.573e-1564.7160S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_CYAPA1.910e-1464.7160S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL16A_SCHPO2.112e-1362.0060S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL16B_SCHPO2.758e-1362.0060S ribosomal protein L16-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC2020 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2020, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492523 ID=EL492523; Name=EL492523; organism=Citrus sinensis; type=EST; length=203bp
ACTAAGCGTGGAGCTGCAGCCCTTGCTCGTTTGAAGGCTTATGAAGGAGT
TCCTGCTCCATATGACAAGACAAAGAGGATGGTCATTCCTGATGCTCTCA
AGGTCTTGAGGCTTCAAAAAGGACACAAGTACTGCTTGTTGGGCAGGCTT
TCATCTGAAGTAGGATGGAACTATTATGACACCATTACTCAGGACTCATC
AAC
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