CV887339

Overview
NameCV887339
Unique NameCV887339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: DNJC2_RAT (DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 69/155 (44.52%), Postives = 99/155 (63.87%), Query Frame = -2
Query:    2 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADC-APQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 460
            QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +F  + +AYE+L DPVKRR ++S D  FD+++P+   A ++F++VF P F RN RWS  + VP LGD N+  ++VD FY+FWY+F SWREF + DE
Sbjct:   87 QDHYAVLGLGHVRYKATQRQIKAAHKTMVLKHHPDKRKAAGEPIKEGD---------NDYFTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKENFFQVFSPVFERNSRWSNKKNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDE 232          
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: DNJC2_MOUSE (DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = -2
Query:    2 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 460
            QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + VP LGD N+  ++VD FY+FWY+F SWREF + DE
Sbjct:   87 QDHYAVLGLGHVRYTATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDYFTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFQVFSPVFERNSRWSNKKNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDE 232          
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: DNJC2_BOVIN (DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = -2
Query:    2 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 460
            QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + VP LGD N+  ++VD FY+FWY+F SWREF + DE
Sbjct:   87 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDYFTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKNVPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDE 232          
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: DNJC2_MACFA (DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.085e-33
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = -2
Query:    2 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 460
            QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + VP LGD N+  ++VD FY+FWY+F SWREF + DE
Sbjct:   87 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDYFTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKNVPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDE 232          
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: DNJC2_HUMAN (DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.038e-32
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = -2
Query:    2 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 460
            QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + VP LGD N+  ++VD FY+FWY+F SWREF + DE
Sbjct:   87 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDYFTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFTPVFERNSRWSNKKNVPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDE 232          
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: YOI1_SCHPO (Uncharacterized J domain-containing protein C1778.01c OS=Schizosaccharomyces pombe GN=SPBC1778.01c PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = -2
Query:    2 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 463
            QQDHYA+LGLS  RY A  +QI+K++ +  LK+HPDK+                    ++ FK +Q+AYE+L DPV+RR +DS DE  D  P +   ++ F++++ P F    R+S  Q VPSLG   +   EVDNFYNFWY+F SWR F + D+
Sbjct:   95 QQDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNIND------------DSFFKCIQKAYEILSDPVRRRQFDSVDENADVEPPESTTKETFFELWTPVFESEARFSKKQPVPSLGTIESTRAEVDNFYNFWYNFDSWRSFEYLDK 237          
BLAST of CV887339 vs. ExPASy Swiss-Prot
Match: ZUO1_YEAST (Zuotin OS=Saccharomyces cerevisiae GN=ZUO1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.040e-24
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = -2
Query:    2 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQ-DFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE 457
            D YA +GLS LR+ ATE QI K++R+  +KYHPDKQ                    +  FK +Q+A+E L D  KR  YDS D   D  P       DFY+ +GP F    R+S    +PSLG++++  KEV+ FY FW+ F SWR F   DE
Sbjct:   97 DLYAAMGLSKLRFRATESQIIKAHRKQVVKYHPDKQSAAGGSLDQ-----------DGFFKIIQKAFETLTDSNKRAQYDSCDFVADVPPPKKGTDYDFYEAWGPVFEAEARFSKKTPIPSLGNKDSSKKEVEQFYAFWHRFDSWRTFEFLDE 238          
The following BLAST results are available for this feature:
BLAST of CV887339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DNJC2_RAT3.568e-3344.52DnaJ homolog subfamily C member 2 OS=Rattus norveg... [more]
DNJC2_MOUSE3.568e-3344.52DnaJ homolog subfamily C member 2 OS=Mus musculus ... [more]
DNJC2_BOVIN4.659e-3344.52DnaJ homolog subfamily C member 2 OS=Bos taurus GN... [more]
DNJC2_MACFA6.085e-3344.52DnaJ homolog subfamily C member 2 OS=Macaca fascic... [more]
DNJC2_HUMAN1.038e-3244.52DnaJ homolog subfamily C member 2 OS=Homo sapiens ... [more]
YOI1_SCHPO3.692e-3043.23Uncharacterized J domain-containing protein C1778.... [more]
ZUO1_YEAST1.040e-2441.18Zuotin OS=Saccharomyces cerevisiae GN=ZUO1 PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030F12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887339 ID=CV887339; Name=CV887339; organism=Citrus sinensis; type=EST; length=827bp
ACTCATCTGCATGTGGGAACTCCCGCCAGCTTTTAAAGCTGTACCAAAAA
TTGTAAAAATTATCTACTTCCTTTAAAGGAGTATTCTCATCGCCTAATGA
TGGTACCAGTTGGTTAGCAGACCACCTTCCATTCCTCGTAAACGCTGGAC
CAAACACCTTGTAGAAGTCTTGTGGGGCGCAATCAGCTGGGATTGCATCA
TCAAACTCATCGGTGGAGTCATAAATTCTTCTCTTCACGGGGTCAATTAA
AACCTCATAAGCTTCTTGGACAGCCTTAAAGTGGGTTTCTATCTCATCCT
TTTTTGCTTGCTTAGCAGCTTCAGTTTCCTCAGCAAAAAGTAGTGCAGCC
TGCTTGTCAGGATGATACTTCAAAGCTGTCTCGCGGTAAGATTTTCTAAT
CTGATCCTCGGTGGCAAGATATCTTAAATGGCTCAATCCCAATAATGCAT
AGTGATCTTGTTGATTGCTTCCTTCACCGGACTTCTTTTTACCTTTGCTG
CTATACGACTCATATGATGGAAAACATGTTTGTTCCTTATCATTTGACAC
TTTCTGGTCATCAACTTCAGCATCTTCCTCACAACCAAGAAGTTTAAGAG
CAGCAGCATGAAAAGAATGACCAGCAGGTTCATATTTAGAAGCCTTTAAA
GGAAGGCAGTTAGAAGAAACATAAATTGGCTGTCCGTCTACAAGCTCGTC
CGAATAGGAAATTAGCCGAAAGCTTGCATGGACTACCATGATGCTTAGAA
ACGACAAACTACAATCAATTACCTCTATATGTATGAACCCTTCAGTCTTC
CAATCTCTGATTGTGCGGTGGCAGCAG
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