CV887337

Overview
NameCV887337
Unique NameCV887337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV887337 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 51/115 (44.35%), Postives = 81/115 (70.43%), Query Frame = -2 
Query:  410 IDAIKEDKRVLQLSLAEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAG 754
            I  IK +K  L+ SL + R +  + R+++ E    +++L KEL SV+GQL AE+SRCFKLE  +AEL++ L++ +T++ E+++L++QK+A EQ    A + + QGSGGVW W+AG
Sbjct:  547 IATIKSEKEELEASLNKERMQTLQLRQELGEAELRNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTLETLQKELELLQRQKAASEQ---AAMNAKRQGSGGVWGWLAG 658
[Close]
BLAST of CV887337 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19
Identity = 44/115 (38.26%), Postives = 80/115 (69.57%), Query Frame = -2 
Query:  410 IDAIKEDKRVLQLSLAEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAG 754
            I  +K +K  ++ SL + + +  + +E++ E+++ ++EL KEL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q+ A   E     + + Q SGGVW W+AG
Sbjct:  529 ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYKELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQR-AVASEQAATMNAKRQSSGGVWGWLAG 642
The following BLAST results are available for this feature:
BLAST of CV887337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ACBP4_ARATH1.281e-2144.35Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACBP5_ARATH2.045e-1938.26Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030F11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887337 ID=CV887337; Name=CV887337; organism=Citrus sinensis; type=EST; length=929bp
ATTCAGCTTATACTGAATTCCATTAATCTTTTAAATAAAGGAATTGAATG
GTACAAAAACAAGAAATCATGTGCAAAAATGAAAAGGAGGGACGATTATT
GTTACATAACAAGGAGAAAACGGAAAGAAATTAAAAAAATTATCAATGCA
TCCAATAAAGAGAAAGGATTTGATCAAATCAATCATATTTCTATCCAAAA
CAACCTTATCTCCACAAAGAATCCCGAGTATAGTTAAATTTGGTCAAAAT
TCGGTGAATACTTTGATAGCTGAGTCCAAATGCATATTTTGACCAGATAC
GCTAAAAGACATAGAAAGTTGCATGAACTTTGCTGTAGCTTGAGAGAGTC
ATGGCCGCTAACCATTTGATGCGTGGATTTGAGGTTCAACAAGGCTATTT
CTACTGCCCCCCAGCAATCCATCGCCAAACACCACCAGAACCTTGGGTCT
GGACAGATGTAGCACGCTCCATTTCCTGCTCAAAGGCAGACTTCTGTTGC
CTAAGTATTTGCACTTCATTTTCTATGGTCTGCGATGATTCAAGCATCTT
CTGTAGCTCTGCTATTTGTGCCTCCAGTTTAAAGCATCTTGATCTCTCGG
CTACCAGCTGACCTTGGACTGAACTGAGTTCCTTGGATAATTCGCTGTGA
GTACTGTTAACTTCATCAATCTTTTCTCTAAACCTAGAATTCTCTGTCCT
GACTTCCGCAAGTGATAATTGCAACACTCTTTTATCCTCTTTGATAGCAT
CAATATCAGTTCTGACATCTTTCTCAGAAAGATCGTTTCCAATTCCAGCA
AATTTTGAACTTAATGTTTTGGGGATATCCAACTTTTCAGATTTGGCTAA
GGCATATGCAGCAGTAACAGAAGCTGCAGCCGCCGCTGCTGCTGGTGACT
GAAAAATCTTGGGGCGTGGTATGTCTCTT
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