CV887333

Overview
NameCV887333
Unique NameCV887333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887333 vs. ExPASy Swiss-Prot
Match: FBK23_ARATH (F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.551e-39
Identity = 79/164 (48.17%), Postives = 114/164 (69.51%), Query Frame = -3
Query:  308 NKLVFCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADL-PGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQCYDWGEQDPFENIWIEPPED 796
            N +VF NG+FYCL+    + VFDP  R W VL VPPP+CP++   K+W +GKFMV +KGDILVI T  +++P++FKLD ++  WEE  TL  LT+F S  S +SR  +  G++RNSVYF ++ +  K+ + YS ++ RY+ R+   DWG+Q   +NIWIEPP++
Sbjct:  187 NNVVFSNGVFYCLNQRNHVAVFDPSLRTWNVLDVPPPRCPDD---KSWNEGKFMVGYKGDILVIRTYENKDPLVFKLDLTRGIWEEKDTLGSLTIFVSRKSCESRTYVKDGMLRNSVYFPELCYNEKQSVVYSFDEGRYHLREHDLDWGKQLSSDNIWIEPPKN 347          
BLAST of CV887333 vs. ExPASy Swiss-Prot
Match: FB204_ARATH (F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-29
Identity = 73/174 (41.95%), Postives = 100/174 (57.47%), Query Frame = -3
Query:  314 NRLPFVSSIWNKLVFCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRAD---LPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQCYDWGEQDPFENIWIEPP 826
            NRL    + + ++VF NG+FYCL+ TG L +FDP    W VL   PPK P +        G FM EH+G+I +IY     NP + KLD +   W E KTL GLT++AS LSS+SRA+     GI  N +  S    F + CI Y +++      + C+ W +Q+P+ENIWI PP
Sbjct:  193 NRLQRNFNTFEQIVFSNGVFYCLTNTGCLALFDPSLNYWNVLPGRPPKRPGS-------NGCFMTEHQGEIFLIYMYRHMNPTVLKLDLTSFEWAERKTLGGLTIYASALSSESRAEQQKQSGIW-NCLCLSVFHGFKRTCIYYKVDEE----SEVCFKWKKQNPYENIWIMPP 354          
BLAST of CV887333 vs. ExPASy Swiss-Prot
Match: FB217_ARATH (F-box protein At4g00893 OS=Arabidopsis thaliana GN=At4g00893 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.513e-28
Identity = 64/168 (38.10%), Postives = 102/168 (60.71%), Query Frame = -3
Query:  305 NKLVFCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGK--FMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMK--TLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQCYDWGEQDPFENIWIEPPEDI 796
            + LV+    FYC +  G L  F+P  R+W  +     +CP     +  W GK  F+VE KG++ V++TC +E P+++KL    M W+E+   TLDG+T F SF +S+ R +LP  MRN+VYFS+  +  K C+S+S ++SRY   K+   W E  P +++WI+ P+++
Sbjct:  219 SNLVYRRDRFYCFNAEGTLYSFEPSYREWSYICADKLRCPYVHENQYMWCGKAVFLVEKKGELFVMFTCSNEKPMVYKL--FSMKWKELSRTTLDGMTFFVSFYNSELRNNLPW-MRNNVYFSRFGYNRKHCVSFSFDESRYNTPKEWEQWVELCPPQSLWIDTPKNV 383          
BLAST of CV887333 vs. ExPASy Swiss-Prot
Match: FBK62_ARATH (F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana GN=At3g18720 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.531e-19
Identity = 64/167 (38.32%), Postives = 88/167 (52.69%), Query Frame = -3
Query:  308 NKLVFCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWW--KGKFMVEHKGDILVIYTCCSENP--IIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQCYDWGEQDPFENIWIEPPED 796
            N+ +F NG+FYCLS +G L VFDP +  W VL V P +     F +     +  FM EH+GDI V+ T    N   + FKL+     WEEMK  +GLT+F+S  +S +RA LP   RN +Y S +  F K     S + + YY     YD        + W++PP D
Sbjct:  231 NRCIFSNGMFYCLSTSGRLSVFDPSRETWNVLPVKPCRA----FRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKVPNGLTVFSSDATSLTRAGLPEEERNILYSSDIDDFVK-----SSHPTFYY-----YDC-------SAWLQPPHD 376          
BLAST of CV887333 vs. ExPASy Swiss-Prot
Match: FB49_ARATH (F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.761e-15
Identity = 59/184 (32.07%), Postives = 90/184 (48.91%), Query Frame = -3
Query:  296 LVFCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPP-PKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKR------CISYSLNDSRY--YPRKQCYD----------WGEQDPFENIWIEPPEDISAF 790
            +++ +G+FY  S T  LGVFDP  R W VL V P P  P +         ++M E++G I ++    S  P++++L++ +  WE+ +TLDG ++F S  S      L G M N +YF   RF  +R      C     +  +Y  Y R  C D          WG++     +WIEPP  IS +
Sbjct:  294 ILYSDGLFYTASETA-LGVFDPTARTWNVLPVQPIPMAPRSI--------RWMTEYEGHIFLV-DASSLEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVMTYGLTGSMSNILYFWS-RFINERRSTKSPCPFSRNHPYKYSLYSRSSCEDPEGYYFEYLTWGQK---VGVWIEPPHSISIY 463          
The following BLAST results are available for this feature:
BLAST of CV887333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FBK23_ARATH2.551e-3948.17F-box/kelch-repeat protein At1g57790 OS=Arabidopsi... [more]
FB204_ARATH2.393e-2941.95F-box protein At3g56470 OS=Arabidopsis thaliana GN... [more]
FB217_ARATH4.513e-2838.10F-box protein At4g00893 OS=Arabidopsis thaliana GN... [more]
FBK62_ARATH8.531e-1938.32F-box/kelch-repeat protein At3g18720 OS=Arabidopsi... [more]
FB49_ARATH9.761e-1532.07F-box protein At1g49360 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030F09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887333 ID=CV887333; Name=CV887333; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTAAGAACTATATCTTCTAATTTAAAAAAAAAAAAAGGCAAAATT
CAGTATTACATGAATTCTTCCGGAAGCATAACTAAGTGCTTCCAGGATGA
TCTACTGGTACAGAGTGCACATTGCATTCCATACAATCCAGTTCCTATGA
AGCATAACTGAAAAATTAAGCAGTATCTACTTAAGCAGTAAGCATCAATG
GCATTCCAATAAAGTGATAAAATATAACAAAACACAATGACACAGAAGTT
TGTCATAACATCTTAGTCGAGCAGACTCACTTGTATTCTTCAAATGAAGG
CCGAAATGTCCTCAGGTGGTTCAATCCAAATGTTTTCAAACGGATCTTGC
TCTCCCCAGTCATAACACTGCTTACGAGGATAGTATCTGCTGTCATTGAG
GGAGTATGATATGCAACGCTTTCCAAAGAAACGAACTTTTGAGAAGTACA
CACTGTTTCTCATTATCCCAGGAAGGTCAGCTCTTGATTGAGATGACAAA
AAACTTGCAAAAAGTGTCAAACCATCAAGGGTTTTCATCTCTTCCCATGC
CATTTTTGACTGATCTAGCTTAAATATAATTGGATTTTCACTACAACATG
TATAAATAACTAAGATGTCTCCTTTATGCTCTACCATAAATTTCCCTTTC
CACCAATTCTTGGCAAAAAAGTTCTCAGGGCATTTGGGTGGGGGCACAAC
GAGGACACCCCAATCACGTTTCACTGGGTCGAAAACCCCTAACCAACCAG
TGAGACTTAGACAGTAAAATATACCATTGCAGAAAACAAGCTTATTCCAA
ATACTACTCACAAAAGGCAACCGATTTT
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