DY306090

Overview
NameDY306090
Unique NameDY306090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306090 vs. ExPASy Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35
Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = -1 
Query:  228 MKAETKAQIEGTVREILVNSDLTETTEFQIRKQASAKMGLDLSQPEYKAFVRHVVTPFLXXXXXXXXXXXXXXXXXXXEPVQ--NDNAEFDVAGNLLICQLNKKRRVAIQDFIGKTLVSLREFYTKGGNELPSAKGISSTEEQWSALRKNVFSIDTAFKKMQSRI 716
            M+ ETK +IE TV EIL  SD+ E TEF++RK AS K+ +DLS+  +KAFVR VV  FL                           N EFD  G+L+IC+L+ KRRV IQ+F GK+LVS+RE+Y K G ELP++KGIS T+EQWS  +KN+ +I+ A KKM+SR+
Sbjct:    1 MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
The following BLAST results are available for this feature:
BLAST of DY306090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KELP_ARATH3.230e-3549.09RNA polymerase II transcriptional coactivator KELP... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CB10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306090 ID=DY306090; Name=DY306090; organism=Citrus sinensis; type=EST; length=749bp
AAGTCTTAATACATGCTAGCATGGATTAAAAATCCCCATCAGTTGCGACA
GATGATATGCTGCCACGCAACAAGAGAGTGGTGGATCAAAAACATCTCCC
ACCACAAAAAAGATCCATAGGGAGCCCCAAAAACTACAGGCAAATCCCTT
AATTACAACTAACCAGGGGACCTCAAGATTCGCAAAGTACACATTCAAAT
TACAGGTCGCCGAGGGATCGCGCGCAGGATCCGGGACTGCATCTTCTTGA
ACGCTGTGTCGATGGAAAAAACATTCTTCCGGAGGGCCGACCATTGTTCC
TCAGTCGATGATATTCCTTTGGCAGAAGGAAGTTCATTGCCGCCTTTTGT
ATAAAATTCCCGTAGCGAAACCAAAGTCTTGCCTATAAAATCTTGAATCG
CCACCCTCCTCTTCTTATTCAGTTGGCAAATAAGGAGATTCCCCGCGACA
TCAAACTCAGCGTTATCATTTTGAACTGGTTCATTTTCCTCATCCTCTTC
CTCTTCTTGTGCTTCTTTGGACTTCTGATCTTGGTCTTCGAGGAAGGGAG
TGACTACGTGTCTAACAAAAGCCTTGTACTCGGGTTGTGAGAGATCGAGT
CCCATCTTTGCCGAAGCCTGTTTCCGAATTTGAAACTCTGTCGTTTCGGT
CAAGTCCGAGTTCACCAGTATTTCTCGGACCGTACCTTCGATTTGGGCTT
TAGTTTCAGCTTTCATTTTTGCTTGTGTGGGTGGGGGGGGGGGGCGGGA
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