CV887317

Overview
NameCV887317
Unique NameCV887317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 5.219e-107
Identity = 193/244 (79.10%), Postives = 213/244 (87.30%), Query Frame = 2
Query:  134 MDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSYYEPA 865
            MD AEL+ EQVLKRDIPWETYM TKL+S  GLQLLRRYD + ES RAQLLD+DGP+YV +FVSILRDI+KEETVEYVLALI EML+ANP RARLFHD+SLA+EDTYEPFLRLLWKGNWFIQEKSCKILA I+SARPK  +    NG           IDDVLK LVEWLCAQLK+PSHP+RGVP+AI+CL++LLKEP+VRSSFVQADGVKLL PLISPASTQQSIQLLYETCLC+WLLSYYEPA
Sbjct:    1 MDQAELSIEQVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNG-----------IDDVLKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPA 233          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.509e-101
Identity = 180/244 (73.77%), Postives = 208/244 (85.25%), Query Frame = 2
Query:  134 MDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSYYEPA 865
            MDHAELTTEQVLKRDIPWE+YM  KLISGT LQLLRRYD++ ES R  LLD+DGPSYVRVF++ILR+I KE+TVEYVLALIDEML  NPKRA LF+D SL+ ED Y+PFLRLL KGNWF+QEKSCKIL  I+SARPK Q+    NGEASNSKSK T+  DVL+ LV+WLC+QL+ P+HP+  VP A++CLA LL+E  VR+ FVQADGVKLL PLISPASTQQSIQLLYETCLC+WLLS+Y+ A
Sbjct:    1 MDHAELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKSKLTSTQDVLRGLVDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAA 244          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_MANSE (V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.547e-17
Identity = 55/244 (22.54%), Postives = 120/244 (49.18%), Query Frame = 2
Query:  122 ILASMDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            ++A+    ++   ++ +  I W++Y+  ++I+      +   D R +     L D +  +   VF+++L  I K+ T++Y+L LID++L+ +  R ++F +    S + ++PFL LL + + F+Q  + +I+A +    P+  D+                    L   + WL  QLK  ++    +     CL  +L+    R +F+  DG+   + L+S  +++ + Q+ Y+   C+W+L++
Sbjct:   23 MIAATSVLQIRASEIRQTQINWQSYLQGQMITQRDHDFIVNLDQRGQK---DLPDKNPDACADVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKY-SGNIWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK------------------SDLHFYLSWLKDQLKMNNNDY--IQSVARCLQMMLRVDEYRFAFLSVDGI---STLLSILASRVNFQVQYQLVFCLWVLTF 239          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_DICDI (V-type proton ATPase subunit H OS=Dictyostelium discoideum GN=vatH PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-16
Identity = 66/238 (27.73%), Postives = 110/238 (46.22%), Query Frame = 2
Query:  155 TEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASED---TYEPFLRLLWKGNWFIQEKSCKILASIVSA-RPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQ-SIQLLYETCLCVWLLSY 853
            T+ VL R+IPW  + ++  I+     L+ +YD  +++ + +    +  SYV  FV+ +      E ++Y+L LI+E++  +P+ A  F  K    +D    Y  F RLL + + +    +   LA I+ A +P   D                     ++    W+   L+K  + S  V V +  L +LL +   R  F   DG  LL  ++   ST   +IQLLYET   +WLL+Y
Sbjct:   21 TKVVLAREIPWNGFASSNSITSEQYNLISKYDKHTDAEKKEKFAANSASYVNFFVNFINSTSNIEIIQYLLTLINEIIEIDPRAAGAF-SKITKDDDKSYPYSVFFRLLNREDAYTNLHASIALAQIMCAGKPTQND---------------------VESFFNWILKLLRK--NNSSEVEVGLIALQSLLLKDDFRIFFNNIDGSALLLNILQALSTSSVNIQLLYETIYAIWLLTY 234          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_HUMAN (V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.450e-16
Identity = 58/237 (24.47%), Postives = 118/237 (49.79%), Query Frame = 2
Query:  161 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEP-FLRLLWKGNWFIQEKSCKILASIVSARPKPQD----RFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L ++D+ML  N +R  +F D +  S++T  P FL +L + + F    + +I+A + +   +  +     ++ N   +   S+      V    VE         S  S+ V     CL  +L+    R ++V+ADGV  +  ++   S +   QL Y+    +WLL++
Sbjct:   25 EVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHICKEQTVQYILTMVDDMLQENHQRVSIFFDYARCSKNTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGV---AVE---TGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVL---SNKCGFQLQYQMIFSIWLLAF 252          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_MOUSE (V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 57/235 (24.26%), Postives = 119/235 (50.64%), Query Frame = 2
Query:  161 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEP-FLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLK--KPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L ++D+ML  N +R  +F D +  S+ T  P FL +L + + F    + +I+A + +   +  +    N   +  K++ ++     KL    +  +      S  S+ V     CL  +L+    R ++V+ADGV  +  ++   S +   QL Y+    +WLL++
Sbjct:   25 EVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSEDKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSS----QKLRGSGVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVL---SNKCGFQLQYQMIFSIWLLAF 252          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_BOVIN (V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 58/235 (24.68%), Postives = 120/235 (51.06%), Query Frame = 2
Query:  161 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDT-YEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQ--LKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L L+D+ L  N +R  +F D +  S++T +  FL +L + + F    + +I+A + +   +  +    N   +  K++ ++     KL    + A+      S  S+ V     CL  +L+    R ++V+ADGV  +  ++   S +   QL Y+    VWLL++
Sbjct:   25 EVRANKVNWQSYLQGQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTLVDDTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSS----QKLRGSGVTAETGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVL---SNKCGFQLQYQMIFSVWLLAF 252          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_DROME (V-type proton ATPase subunit H OS=Drosophila melanogaster GN=VhaSFD PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 61/245 (24.90%), Postives = 115/245 (46.94%), Query Frame = 2
Query:  122 ILASMDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKS-LASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            ++A+    +     +  R I W +YM +++IS    + +   D      RA  L  +    V+  ++++  + K+ T++Y+L L+D++L  +  R  LFHD +    +  + PFL LL + + FI   S +ILA           +F   G  +  KS        L   +++L  QL   S+ +  +     CL  +L+    R +FV  DG+  L  ++   ST+ + Q+ Y+   C+W+L++
Sbjct:   14 MIAATSVLQQQAADIRTRTINWASYMQSQMISEEDYKAISALDKS----RASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQEDRSRVDLFHDTAGKLKQCIWGPFLNLLNRQDGFIVNMSSRILA-----------KFACWGHETMPKSD-------LNFYLQFLKDQL--ASNNNEYIQSVARCLQMMLRVDEYRFAFVGVDGISTLIRIL---STRVNFQVQYQLIFCLWVLTF 231          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH_PIG (V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 56/237 (23.63%), Postives = 117/237 (49.37%), Query Frame = 2
Query:  161 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDT-YEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQD----RFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L ++D+ L  N +R  +F D +  S++T +  FL +L + + F    + +I+A + +   +  +     ++ N   +   S+      V    VE         S  S+ V     CL  +L+    R ++V+ADGV  +  ++   S +   QL Y+    +WLL++
Sbjct:   25 EVRANKVNWQSYLQGQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLASQKLRGSGV---AVE---TGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVL---SNKCGFQLQYQMIFSIWLLAF 252          
BLAST of CV887317 vs. ExPASy Swiss-Prot
Match: VATH2_CAEBR (Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis briggsae GN=vha-15 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 57/243 (23.46%), Postives = 105/243 (43.21%), Query Frame = 2
Query:  146 ELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDN-RSESHRAQLL--DDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDT-YEPFLRLLWKGNWFIQEKSCKILASIVS---ARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSY 853
            +L   +V      W +Y  +K+I      L+  Y+N +S+  R Q++  +D      +   +++  + K++ V YVL L D+ML  +  R  +FH  +   + T +  +L +L + + FI  +   I+A +      R + QD                     L+    +L  QLK  S  +  +     CL  +L+    R  FV  DGV+    L++  + + + QL Y+    VW L++
Sbjct:   22 QLEAAEVRSNKPNWGSYFRSKMIQEDDYTLVTSYENAKSKDERDQVIAANDANGQLAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVEIFHKAAHRQKRTAFSQYLGILQRQDNFIVNQMSSIIAKLACFGVTRMEGQD---------------------LQYYFSFLKEQLKN-STTNEYMNTTARCLQMMLRHDEYRHEFVVTDGVQ---TLVTALNGKTNFQLQYQLIFSVWCLTF 239          
The following BLAST results are available for this feature:
BLAST of CV887317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VATH_ARATH5.219e-10779.10V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_ORYSJ2.509e-10173.77Probable V-type proton ATPase subunit H OS=Oryza s... [more]
VATH_MANSE8.547e-1722.54V-type proton ATPase subunit H OS=Manduca sexta PE... [more]
VATH_DICDI3.248e-1627.73V-type proton ATPase subunit H OS=Dictyostelium di... [more]
VATH_HUMAN9.450e-1624.47V-type proton ATPase subunit H OS=Homo sapiens GN=... [more]
VATH_MOUSE1.612e-1524.26V-type proton ATPase subunit H OS=Mus musculus GN=... [more]
VATH_BOVIN1.612e-1524.68V-type proton ATPase subunit H OS=Bos taurus GN=AT... [more]
VATH_DROME6.125e-1524.90V-type proton ATPase subunit H OS=Drosophila melan... [more]
VATH_PIG1.045e-1423.63V-type proton ATPase subunit H OS=Sus scrofa GN=AT... [more]
VATH2_CAEBR9.153e-1123.46Probable V-type proton ATPase subunit H 2 OS=Caeno... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887317 ID=CV887317; Name=CV887317; organism=Citrus sinensis; type=EST; length=865bp
GCTCTTCACGAGCACTGTCTTCTCGCCAGAATTAACGAGACAGTGGTGGA
AGAAAGAGAAATAAACAAAATTCAGAATTTTGGAGGTATTTGAATTGGAG
TAATTTTGTGAGGTTTTGAGTATTTTAGCATCAATGGACCATGCTGAACT
TACCACAGAGCAGGTTCTGAAGAGGGACATCCCATGGGAGACCTACATGA
CAACGAAGCTGATTTCAGGAACAGGGCTTCAGCTGTTAAGACGATATGAT
AACAGATCAGAAAGTCACCGGGCTCAATTGCTGGATGATGATGGTCCATC
TTATGTCCGGGTGTTTGTTAGCATTTTAAGAGACATATATAAGGAAGAAA
CAGTGGAATATGTTCTGGCTTTAATTGATGAGATGCTGACAGCCAATCCA
AAGAGAGCCAGATTATTCCATGATAAATCTCTTGCAAGTGAAGATACTTA
CGAACCTTTCTTAAGATTGCTGTGGAAAGGTAATTGGTTCATACAAGAAA
AGAGCTGTAAGATATTAGCTTCGATTGTAAGTGCTAGGCCAAAACCACAG
GATCGCTTTTTTGCTAATGGGGAAGCCTCAAATTCAAAAAGCAAATCCAC
TACCATTGATGATGTTTTAAAATTATTGGTTGAATGGCTTTGTGCACAGC
TGAAGAAGCCTTCCCATCCTAGTCGTGGCGTTCCAGTTGCTATCAATTGC
CTTGCAGCATTACTGAAGGAACCTATGGTGAGATCTTCGTTCGTTCAAGC
AGATGGGGTGAAGTTGTTGACCCCTTTAATTTCACCTGCATCCACGCAGC
AATCTATCCAGCTTCTTTATGAAACATGTCTCTGCGTCTGGCTCTTGTCT
TACTATGAACCTGCA
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