CV887303

Overview
NameCV887303
Unique NameCV887303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.420e-49
Identity = 105/207 (50.72%), Postives = 139/207 (67.15%), Query Frame = 3
Query:   75 MGYGRLQPSSDPGGSSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTRAVG---PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNG 686
            MGY RL PS   G S+  +  P  ATS P+                 A+++   V   +  G++    G   P +  KPTQAISRTCSK+LYPNLC+ +LL+FPGSLTA E +L+HISFN TLQ FS+ALY +S I+Y QM P VRSA+D CLELLDDSVDAL+R+L SV+++ G +     DV+TWLS+A+TNHDTC++GF+++ G
Sbjct:    1 MGYDRLGPS---GPSNPNQKDP--ATSLPE---LQKKTKTKLILFTLAVLVVGVVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE--SHSDVMTWLSSAMTNHDTCTDGFDEIEG 197          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.428e-41
Identity = 93/211 (44.08%), Postives = 128/211 (60.66%), Query Frame = 3
Query:   75 MGYGRLQPSSDPGG---SSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTRAV----GPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASE-QDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLN 683
            MGY RL PS   G    S+         +++ QP                 L I+  ++A +  G+++R       P +  KP+QAIS+ C  T +P LCV SL++FPGSL AS  +DL+H++ NMTL HFS ALY ++ +S++ M P  RSA+D C+ELLDDSVDALSR+L SV+        K +DV TWLSAALTNHDTC+EGF+ ++
Sbjct:    1 MGYERLGPSGATGSVTTSTTTAPILNQVSTSEQPENNNRRSKKKLVVSSIVLAISLILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVV----SSSAKPQDVTTWLSAALTNHDTCTEGFDGVD 207          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 44/175 (25.14%), Postives = 83/175 (47.43%), Query Frame = 3
Query:  222 IIASAVSAVLLVGLKTRAVGPTIGHK--------------PTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKR--------EDVLTWLSAALTNHDTCSEGFEDL 680
            ++  ++S V+L+ +   AV  T+ HK              P+ ++   CS T +P  C+SS+   P S T   + L  +S  + +            +S    D  ++SA   C +L++D++D L+ ++ ++      D  K+        ED+ TWLSA +T+H+TC +  ++L
Sbjct:   29 LLLLSISVVVLIAVIIAAVVATVVHKNKNESTPSPPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAI-----DDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDEL 198          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 48/165 (29.09%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  219 LIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRT--------CSKTLYPNLCVSSLLNFP--GSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQ--MDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKR--EDVLTWLSAALTNHDTCSEGF 671
            L++A+ +  V   G+K+ +      H    AIS +        CS TL+P LC S+++N         S++D++ +S N+T++   R  Y    +   +  + P  + A  DCLE +D+++D L  ++  + L P     K   ED+ T +S+A+TN +TC +GF
Sbjct:   30 LLVAAVIGVV--AGVKSHSKNSD-DHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGF 191          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  219 LIIASAVSAVLLVGLKTR---AVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSV-----LLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNG 686
            L+I+  V+  + V L      + G    +   +A+   C+ T Y   C  +L+   G  T    +LV  +FN+T++  + A   +  I  LQ D   R A D C EL+D ++D LS S   +      LL    IN R     WLSAA+++ +TC EGF+   G
Sbjct:   24 LLISMVVAVTVGVSLNKHDGDSKGKAEVNASVKAVKDVCAPTDYRKTCEDTLIK-NGKNTTDPMELVKTAFNVTMKQITDAAKKSQTIMELQKDSRTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLR----IWLSAAISHEETCLEGFQGTQG 182          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 41/156 (26.28%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  216 ALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQ--MDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKRE--DVLTWLSAALTNHDTCSEGF 671
            AL+  +AV+ +   G        T+       +  +CS T YP LC+S+++   G    S++D++  S N+T+       +    +   +  + P  ++A  DCLE +D+++D L  ++  + L P     +    D+ T +S+A+TN +TC +GF
Sbjct:   28 ALLFVAAVAGIS-AGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGF 182          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  213 FALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRT-CSKTLYPNLCVSSLLNFP--GSLTASEQDLVHISFNMTLQHFSRALYFTSGISYL----QMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKR------EDVLTWLSAALTNHDTCSEGF 671
            FA ++  A    ++ G+ +R      G++P  AI ++ CS T YP+LC S++   P       S++D++ +S N+T        +   GI  L     +    + A  DCLE +D+++D L +++  +   P    NK+      +D+ T +SAA+TN  TC +GF
Sbjct:   35 FATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYF---GIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYP----NKKSLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of CV887303 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  213 FALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRT-CSKTLYPNLCVSSLLNFP--GSLTASEQDLVHISFNMTLQHFSRALYFTSGISYL----QMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKR------EDVLTWLSAALTNHDTCSEGF 671
            FA ++  A    ++ G+ +R      G++P  AI ++ CS T YP+LC S++   P       S++D++ +S N+T        +   GI  L     +    + A  DCLE +D+++D L +++  +   P    NK+      +D+ T +SAA+TN  TC +GF
Sbjct:   35 FATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYF---GIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYP----NKKSLSQHADDLKTLMSAAMTNQGTCLDGF 193          
The following BLAST results are available for this feature:
BLAST of CV887303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PME61_ARATH3.420e-4950.72Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH3.428e-4144.08Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME1_ARATH2.560e-1225.14Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PMEU1_SOLLC4.367e-1229.09Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME21_ARATH1.659e-1131.10Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME3_ARATH2.167e-1126.28Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI4.828e-1128.92Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI4.828e-1128.92Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887303 ID=CV887303; Name=CV887303; organism=Citrus sinensis; type=EST; length=694bp
AAACCCTTCACATTCTCCTCGAAGACCCAGCCAAACAAAAAAGACTAACT
GAGGTCATCGGTACTTGAAATCTGATGGGTTACGGCAGGCTCCAGCCCTC
CTCCGACCCCGGGGGTTCTTCATTCCGCGAGGACCAACCCGGGCATGCCA
CGTCGGCACCCCAGCCTTCTTCCCGCAGCAGGAAGAAGCTCATCCTCCTC
TCCGTCCTCTCATTCGCATTAATCATCGCCTCCGCCGTCTCCGCCGTCCT
CCTCGTGGGCCTCAAGACGCGTGCCGTGGGCCCCACCATCGGCCACAAGC
CCACCCAGGCCATTTCCCGCACGTGCAGCAAGACCCTCTACCCGAACCTC
TGCGTCAGCTCGCTCCTCAACTTCCCGGGCTCGCTCACCGCCTCCGAGCA
GGACCTCGTCCACATTTCGTTCAACATGACGCTGCAGCACTTCAGCAGGG
CCCTGTATTTCACCTCCGGTATCTCCTATCTCCAGATGGACCCACACGTG
CGCTCCGCATTCGACGACTGCCTCGAGCTCCTGGACGACTCCGTGGACGC
GCTCTCACGCTCCCTCGGCTCCGTGCTGCTGCTACCCGGAGGCGATATTA
ATAAAAGAGAGGACGTGCTGACGTGGCTCAGCGCAGCGCTGACCAACCAC
GACACCTGTTCGGAGGGATTTGAGGATTTGAACGGGCCGGTGAA
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