CV887302

Overview
NameCV887302
Unique NameCV887302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 85/190 (44.74%), Postives = 130/190 (68.42%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 688
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G G++E +EW+V+ + R+
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRN 190          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 85/190 (44.74%), Postives = 130/190 (68.42%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 688
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G G++E +EW+V+ + R+
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRN 190          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 84/190 (44.21%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 688
            M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK++ +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A S   G G++E +EW+V+ + R+
Sbjct:    1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRN 190          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.051e-42
Identity = 84/190 (44.21%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 688
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A S   G G++E +EW+V+ + R+
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRN 190          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.051e-42
Identity = 84/190 (44.21%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 688
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A S   G G++E +EW+V+ + R+
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRN 190          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.521e-33
Identity = 71/195 (36.41%), Postives = 122/195 (62.56%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV-FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA----VSGYDGFGIKESVEWLVEVMERSKRT 697
            MF L  GL+     K ++ +LILG+D AGKTT LE LK  YS +     ++I PTVG N+  I V + +++ FWD+GGQ  LRS+W +YY   H ++F++D++   R ++  T L+ V+ +E+++G P+L+LANKQD  D +   ++    +  K+ E +   ++    +S   G G+K+++EW++  +ER+K++
Sbjct:    1 MFHLVKGLYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYS-LAFKALEKIQPTVGQNVATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFN--KIAEHISARDSRVLPISALTGEGVKDAIEWMIVRLERNKKS 192          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 68/166 (40.96%), Postives = 101/166 (60.84%), Query Frame = 2
Query:  176 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 673
            E  +L+LG+D AGKTT+L+K         G     I PT+G NI  +     KL  WD+GGQ  LRS W  YYEE  AV++VID++   R +D K  L+K+L  E   GA  L+ ANKQDL  A++++E+++YLDL++L+       + S   G G++E ++W+V+
Sbjct:   16 ELRILMLGLDNAGKTTILKKFN-------GEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGIDWVVK 174          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 3.878e-29
Identity = 72/189 (38.10%), Postives = 107/189 (56.61%), Query Frame = 2
Query:  134 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 691
            S+F  LW    +  E  +LILG+D AGKTT+L +L+             +V   PT+G N+  +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L  +L+ E+LQ A LL+ ANKQD P A+SA E+++ L+L +L +R     A S   G GI E ++WL++V++  +
Sbjct:    7 SMFDKLWG---SNKELRILILGLDGAGKTTILYRLQI----------GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 694
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LLI ANKQDLP+A++A E+   L L  L  R    +A     G G+ E ++WL   ++ + R
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  128 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 694
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LLI ANKQDLP+A++A E+   L L  L  R    +A     G G+ E ++WL   ++ + R
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182          
The following BLAST results are available for this feature:
BLAST of CV887302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARFRP_RAT4.718e-4344.74ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_MOUSE4.718e-4344.74ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_BOVIN4.718e-4344.21ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
ARFRP_PONAB1.051e-4244.21ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_HUMAN1.051e-4244.21ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
ARL3_YEAST1.521e-3336.41ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
ARL2_DICDI1.574e-3040.96ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL1_YEAST3.878e-2938.10ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARF1_LOCMI1.925e-2834.03ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME1.925e-2834.03ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887302 ID=CV887302; Name=CV887302; organism=Citrus sinensis; type=EST; length=803bp
GCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGACTTT
GGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAATAAA
TACAAATTAACGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTATGGACT
TTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCTTGGAA
TTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTGTCTAC
TCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTGGGACT
GAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTGGGATC
TGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATGAAGAG
GCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGTTTTGA
AGATTCAAAAACTGCTCTAGAAAAGGTTCTTCGGAATGAGGATTTGCAAG
GAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATGCTGTA
TCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGATGAACG
GGTTTGCATGTTTGAAGCAGTGTCAGGTTATGATGGATTCGGAATAAAAG
AAAGTGTAGAGTGGTTGGTCGAGGTAATGGAGAGGAGCAAGAGAACTGAA
ATGTTGAGAGCTCGTGCTGGTGCAAGTACTGGTTCAGTTTAGTAGGAACA
TTATATTAAATCACAGCTGATGTCCTCTGCCTTTTGTAGCTTCTGTAAAT
AAA
back to top