CX044039

Overview
NameCX044039
Unique NameCX044039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: HSDD2_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 4.331e-111
Identity = 191/238 (80.25%), Postives = 215/238 (90.34%), Query Frame = 2
Query:    2 PSVVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLKRVG 715
            PSVVFDG HGI+NG E++ YP KHND YSATKAEGE L++KANG NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN+YDFTYV NVAHAH+CAERALAS   V+ KAAGQAYF+TNME IKFWEF+S +L+GLGY+RP IKIPAF+MMPIAH+VELTY++LGPYGM VPQLTPSRVRLLSCSRTFD +KAKD LGY P+VPL+EGI+RT+DS+SHL A +Q KR G
Sbjct:  134 PSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGGDVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELTYKVLGPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQSKREG 371          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: HSDD1_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.180e-108
Identity = 186/235 (79.15%), Postives = 211/235 (89.79%), Query Frame = 2
Query:    2 PSVVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLK 706
            PSVVFDG HG +N +E+LPYPPKHND YSATKAEGEAL++KANG +GLLTCCIRPSSIFGPGD+L+VPSLV AARAGKSKFIIGDG+N YDFTYV NV HAH+CAERALAS   V  KAAGQAYF+TNME IKFWEF+S +LEGLGY+RP IKIPA +MMPIA++VEL Y+LLGPYGMKVP LTPSRVRLLSC+RTFD SKAKD LGY P+VPL+EGIKRT+DS+SHL+A+NQ K
Sbjct:  134 PSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLLTCCIRPSSIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERALASGGEVCAKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELAYKLLGPYGMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLKAQNQPK 368          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: HSDD3_ARATH (3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.587e-47
Identity = 102/225 (45.33%), Postives = 147/225 (65.33%), Query Frame = 2
Query:    8 VVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL-SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 679
            VVFDG   I +G+E+L  P K     +  KA+ EAL+  AN  +GLLTC +R S +FGPGD   VP LV  A++G +KFI+G G N+ DFTY  NV+HAHICA +AL S++   E  AG+ +F+TN++ ++FW+FVS I+EGLGY RP IK+P  +++ +  +++ T+      G+     T  +  LL S +RTF+C+ AK  LGY P+V LE+GI  T+  +S
Sbjct:  137 VVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSSIVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQM---EFVAGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHE---KEGLGSNYDTAHQYALLASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS 355          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: NSDHL_MOUSE (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.087e-45
Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 2
Query:    5 SVVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 694
            SVVF+G   I NG E LPY  K  D+Y+ TK   E  V+ AN      LT  IRP  IFGP D  LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A   L+ +  +     G+A+ +TN E I FW F+S IL GL Y+ P+  IP ++   +A ++ L   ++ P     P  TP RV L      + C KAK L GY P+V ++E ++RTV S+ HLR +
Sbjct:  136 SVVFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRPHGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAALG----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQIQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKD 361          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: NSDHL_HUMAN (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Homo sapiens GN=NSDHL PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.130e-45
Identity = 99/229 (43.23%), Postives = 134/229 (58.52%), Query Frame = 2
Query:    5 SVVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 688
            SV+F+G   I NG E LPY  K  D+Y+ TK   E  V+ AN      LT  IRP  IFGP D  LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A   L+ + T+     G+A+ +TN E I FW F+S IL GL Y+ P+  IP +V   +A ++ L   ++ P     P  TP RV L      + C +AK  +GY P+V +++ ++RTV S+ HLR
Sbjct:  147 SVIFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRPHGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQLSRDSTLG----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLLSLLVMVISPVIQLQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLR 370          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: NSDHL_RAT (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.569e-44
Identity = 101/231 (43.72%), Postives = 133/231 (57.58%), Query Frame = 2
Query:    5 SVVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 694
            SVVF+G   I NG E LPY  K  D+Y+ TK   E  V+ AN      LT  IRP  IFGP D  LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A   L+ +  +     G+A+ +TN E I FW F+S IL GL Y+ P+  IP  V   +A ++ L   +L P        TP RV L      + C KAK L+GY P+V +++ ++RTV S+ HLR +
Sbjct:  136 SVVFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRPHGIFGPRDPQLVPVLIDAARKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHLSRDAGLG----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYRVAYYLAFLLSLLVMVLSPLIQIQTTFTPFRVALAGTFHYYSCEKAKKLIGYRPLVTMDDAVERTVQSFHHLRKD 361          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: NSDHL_BOVIN (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.566e-44
Identity = 97/229 (42.36%), Postives = 133/229 (58.08%), Query Frame = 2
Query:    5 SVVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 688
            SV+F+G   I NG E LPY  K  D+Y+ TK   E  V+ A+      LT  IRP  IFGP D  LVP L+ AA+ GK KF+IG+G N+ DFT+V NV H HI A   L+ +  +     G+A+ +TN E I FW F+S IL GL Y+ P+  IP ++   +A +V L   ++ P     P  TP RV L      + C KAK L+GY P+V +++ + +TV S+ HLR
Sbjct:  130 SVIFEGVD-IKNGTEDLPYATKPIDYYTETKILQERAVLGAHDPEKNFLTTAIRPHGIFGPRDPQLVPILIEAAKKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHLSQDTALG----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWLAYYLALLVSLLVMVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLMGYRPLVTMDDAVDKTVRSFHHLR 353          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: ERG26_SCHPO (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe GN=erg26 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 90/222 (40.54%), Postives = 130/222 (58.56%), Query Frame = 2
Query:    8 VVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICA-ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR-IKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 667
            VVF+G   +IN +E+ P P  H D Y+ +KA  E  V++A+ +  L T  +R + +FGPGDR LVP +++  + G++KF +GD  N++DFTY+ N A+AH+ A +  L+S  T    A GQ +F+TN + I FW+F   I    G+  P  IK P  V M +A   E     L     K P  T  RV+    +R F+  KA+D+L Y PIV LEEGI+RT+
Sbjct:  120 VVFNGAD-LINVDESQPIPEVHMDAYNESKALAEKQVLEAS-SESLKTAALRVAGLFGPGDRQLVPGMLSVLKNGQTKFQLGDNLNLFDFTYIENAAYAHLLAMDNLLSSNPT----ANGQVFFITNGQVIYFWDFARAIWAHAGHVPPYIIKFPRPVGMLLATAAEWVCYFL----KKEPGFTRFRVQFSCANRYFNIQKAEDVLKYHPIVDLEEGIRRTL 331          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: ERG26_YEAST (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Saccharomyces cerevisiae GN=ERG26 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 86/222 (38.74%), Postives = 126/222 (56.76%), Query Frame = 2
Query:    8 VVFDGFHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGY-QRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 667
            V+F+G   + N +E  P P    D Y+ TKA  E +V+KAN  ++   T  +RP+ IFGPGDR LVP L   A+ G+SKF IGD NN++D+TY  NVA AH+ A + L    T     +G+ +F+TN     FW     + +  G+  +  I +   V +   ++ E   ++LG    K P LTP RV+++   R  + +KAK LLGY P V +EEGI +T+
Sbjct:  127 VIFNG-QDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDPSSDFYTVALRPAGIFGPGDRQLVPGLRQVAKLGQSKFQIGDNNNLFDWTYAGNVADAHVLAAQKLLDPKT-RTAVSGETFFITNDTPTYFWALARTVWKADGHIDKHVIVLKRPVAICAGYLSEWVSKMLG----KEPGLTPFRVKIVCAYRYHNIAKAKKLLGYTPRVGIEEGINKTL 342          
BLAST of CX044039 vs. ExPASy Swiss-Prot
Match: D42E1_DANRE (Short chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 77/217 (35.48%), Postives = 122/217 (56.22%), Query Frame = 2
Query:    5 SVVFDGFHGIINGNEALPYPPKH--NDFYSATKAEGEALVIKANG------TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNMYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP 631
            +VVF G   I NG+E+LPY P H   D YS TK+  E  V+KAN       T  L TC +RP+ I+GPG++  +P +V+    G  +F+ GD +++ +F +V N+  AH+ A  AL  +     +AAGQAYF+++   +  +EF   ++EGLGY  P +++P  ++   A + E+ + ++G      P LT + V     +  F   KA++ LGY P
Sbjct:  122 NVVFGG-QEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALSNSTGVLRTCALRPAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADALTEKQQC--RAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYFFAFLTEMVHFVVGRIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEP 335          
The following BLAST results are available for this feature:
BLAST of CX044039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HSDD2_ARATH4.331e-11180.253beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
HSDD1_ARATH1.180e-10879.153beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
HSDD3_ARATH2.587e-4745.333beta-hydroxysteroid-dehydrogenase/decarboxylase i... [more]
NSDHL_MOUSE1.087e-4543.72Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
NSDHL_HUMAN4.130e-4543.23Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
NSDHL_RAT1.569e-4443.72Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
NSDHL_BOVIN4.566e-4442.36Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
ERG26_SCHPO9.543e-3440.54Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
ERG26_YEAST1.246e-3338.74Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
D42E1_DANRE4.149e-2935.48Short chain dehydrogenase/reductase family 42E mem... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15A04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15A04-A7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044039 ID=CX044039; Name=CX044039; organism=Citrus sinensis; type=EST; length=715bp
TCCCAGTGTGGTTTTTGATGGGTTTCATGGGATCATTAATGGGAATGAAG
CATTACCATATCCACCTAAGCACAATGATTTTTATTCAGCTACAAAAGCT
GAAGGAGAGGCATTGGTTATCAAGGCTAATGGTACTAATGGGCTTCTAAC
CTGTTGCATACGTCCTAGCAGCATTTTTGGACCTGGTGATAGGTTATTGG
TTCCATCTTTAGTTGCTGCTGCAAGGGCTGGAAAATCCAAGTTCATAATT
GGAGATGGCAATAACATGTACGATTTCACTTATGTTGCAAATGTGGCACA
TGCTCATATATGTGCTGAACGAGCTCTAGCATCGGAAGTGACTGTTGCGG
AGAAAGCTGCAGGGCAGGCATATTTTGTAACCAATATGGAGTCTATCAAG
TTTTGGGAATTTGTCTCACTAATACTTGAAGGTCTTGGCTACCAGAGGCC
GAGGATAAAGATACCTGCCTTTGTTATGATGCCAATTGCACACATGGTGG
AGTTGACGTATAGGCTGCTAGGTCCTTATGGAATGAAGGTTCCACAGTTG
ACACCTTCAAGAGTTAGACTACTCTCTTGCAGCAGAACTTTTGATTGTTC
AAAAGCGAAGGATCTACTTGGCTACATGCCCATTGTGCCACTCGAGGAGG
GCATAAAGAGGACAGTTGACTCTTATTCACACTTGAGAGCTGAAAATCAG
TTAAAGAGAGTAGGG
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