CV887294

Overview
NameCV887294
Unique NameCV887294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887294 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  173 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIXXXXXXXXXXXXXFCGKKVPSGFQC 421
            CPRD LKLGVCA+VLN + ++V+G+PP  PCCSL++GLV+LEAAVCLCTAIKANILG               CGK+VP+GF+C
Sbjct:   54 CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CV887294 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  170 TCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIXXXXXXXXXXXXXFCGKKVPSGFQC 421
            TCP D LKLG C +VL  L+H+ +G   K  CC L+ GLVDL+AA+CLCT I+  +L I              CGK  P  F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CV887294 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 2
Query:  173 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIXXXXXXXXXXXXXFCGKKVPSGFQC 421
            CP D LKL VCA VL     + VG P    CC L++GLVDL+AA+CLCTAIKAN+LGI              CG+  P  F C
Sbjct:   48 CPIDALKLKVCAKVLG---LVKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CV887294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA1.564e-2361.4514 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC1.568e-1545.2436.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE5.043e-1449.40Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030D10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887294 ID=CV887294; Name=CV887294; organism=Citrus sinensis; type=EST; length=726bp
CTTTCTTCACAGGCCATCAAATAATTTAGATATGGCAAGGGTTCTACTAG
CACCAACTGCCCTTCTCCTTTCCCTCAACCTCATCTTCTTCACTTTGGTT
AGCTCTACTTATGTACCCTGCCCACCACCACCACCTAAGAGCCACAAGCA
CCCACCTGCCCCCAAGCCCACTTGCCCTAGGGATACCCTAAAGTTGGGTG
TATGTGCTAATGTGTTGAATGATTTGGTGCACCTTGTTGTTGGAACCCCA
CCAAAGACTCCTTGCTGCAGCCTAATTAAAGGTTTGGTTGATCTTGAAGC
CGCTGTTTGCCTTTGCACTGCCATTAAAGCCAATATCTTAGGCATTAACC
TCAATGTGCCTGTTTCACTTAGCTTGTTGCTCAATTTCTGCGGAAAGAAA
GTCCCTTCCGGCTTCCAATGCGCTTAAATCAGCTAATCAGCTATTTGTTG
CCATCAATTTATTTCTAGCCATTTTTTTGCGTTGTTTAATCGATCCATTT
CAATGTGTGTTTGTATTATGTGTACTTTTTTTCTTTTTTTTAAACGAAGA
AGATGAGGGGAGGACAAAACTCAAATTCATTTTAACATCCTACCTTGTCT
GAAATTTAAATTTGAATGGCCATCCAAATAAAAATTTTGTATTATGTATT
AATTATTGGCATATTCCAATATTTCTTTAATATATTGAGTGCTTAAATTT
TAATTTATTCAAAAAAAAAAAAAAAA
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