CV887293

Overview
NameCV887293
Unique NameCV887293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_MOUSE (Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.741e-30
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = -2
Query:  536 VVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQE--DDSSAEPN 865
            VVY ++DSETDIVLKGVV+V  ++   +HIG VL+R K E++ + YKI+ W +  DFL +L   TGKLL+GGEPD +T +KM+L+DWQRG+IPFFV PP+ E   DS   P+
Sbjct:  365 VVYPSEDSETDIVLKGVVQVEKIKAPQDHIGAVLERAKPEYISKTYKIESWENAEDFLEKLALRTGKLLKGGEPDMLTVSKMVLNDWQRGRIPFFVKPPNAEIPTDSQLPPS 476          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_HUMAN (Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.346e-29
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = -2
Query:  560 VVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQE 865
            VVY ++DSETDIVLKGVV+V  ++   +HIG VL+R K E++ + YKI  W +  DFL +L   TGKLL+GGEPD  T  KM+L+DWQRG+IPFFV PP+ E
Sbjct:  365 VVYPSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPPNAE 466          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_CRYNV (Nucleolar GTP-binding protein 2 OS=Cryptococcus neoformans var. grubii GN=NOG2 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.114e-24
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = -2
Query:  434 KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD----WVDEND---FLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQEDDSSAEPNVCGLNEEAVGDNNQASAALKVIASVMSSQQQRNV 850
            KDS+TD VLKGVVRV NL   AEHI  +L+RV+ E+L+R Y ++     W  E      L  + K +GKLL+GGEPD   AAKM+L+DW RGK+PFFV PP  + +S A+ +V     E V +  Q   A +     M  +Q+R++
Sbjct:  389 KDSDTDTVLKGVVRVENLATPAEHIPALLERVRPEYLERTYGLEHVEGGWHGEEGATFVLTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKVPFFVAPP-TKPESGADAHVSSATTEKVQEQEQKELAEEKETKEMLEEQERSL 533          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_KLULA (Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis GN=NOG2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.583e-23
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = -2
Query:  539 NKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQEDDSSAEP 853
            +KDSE DI+ +GVVRV ++    ++I  +LKR K++HL+R Y+I  W D  DF+  + +  G+LL+GGEPD    +K IL+D+ RGKIP+FVPPP ++     EP
Sbjct:  374 SKDSEEDILFRGVVRVEHVSHPEQYIPGILKRCKRQHLERTYEISGWKDSVDFIEMIARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVPPPEKDKIEEKEP 478          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_CRYGA (Nucleolar GTP-binding protein 2 OS=Cryptococcus gattii GN=NOG2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.322e-22
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = -2
Query:  557 KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD----WVDEND---FLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQED 850
            KDS+TD VLKGVVRV NL   AEHI  +L+RV+ E+L+R Y ++     W  E      L  + K +GKLL+GGEPD   AAKM+L+DW RGKIPFFV PP + +
Sbjct:  399 KDSDTDTVLKGVVRVENLATPAEHIPALLERVRPEYLERTYNLEHVEGGWHGEQGATVILTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKIPFFVAPPAKSE 503          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_CANGA (Nucleolar GTP-binding protein 2 OS=Candida glabrata GN=NOG2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.033e-22
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  509 KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQEDDSSAEPNVCGLNEEAV 850
            KDSE DI+ +GVVRV ++    ++I  VLKR + +HL+R Y+I  W D  DF+  L +  G+LL+GGEPD    +K IL+D+ RGKIP+FV PP +E+D   +     L+EE V
Sbjct:  376 KDSEEDILFRGVVRVEHVSHPEQYIPGVLKRCQTKHLERTYEISGWKDATDFIEMLARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVIPPEKEEDKKRK-----LDEEEV 484          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_YARLI (Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica GN=NOG2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.825e-22
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  557 KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQED 850
            KDSETDI+ +GVVRV ++    ++I  +L+R + +HL+R Y++  W +  +FL ++ +  G+LL+GGEPD    AK+IL+D+ RGKIP+FVPPP  ED
Sbjct:  368 KDSETDILFRGVVRVEHVSYPEQYIPALLERCETKHLERTYEVSGWSNATEFLEKIARKHGRLLKGGEPDESGIAKLILNDFNRGKIPWFVPPPQAED 465          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_ASHGO (Nucleolar GTP-binding protein 2 OS=Ashbya gossypii GN=NOG2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  560 KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQE 850
            KD+E DI+ +GVVRV ++    ++I  VL+R K+ HL+R Y+I  W D  +F+  L +  G+LL+GGEPD    AK +L+D+ RGKIP+FV PP ++
Sbjct:  375 KDTEEDILFRGVVRVEHVSHPEQYIPAVLRRCKRHHLERTYEISGWADATEFIEMLARKQGRLLKGGEPDETGVAKQVLNDFNRGKIPWFVSPPDRD 471          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_SCHPO (Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe GN=nog2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.470e-21
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  572 NKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPP 853
            + DS+ +++LKGVVRV N+ +   +I  VL R K +HL+R Y+I  W D  +FL +L K  G+LL+GGEPD  + AKM+L+D+ RGKIP+F+ P
Sbjct:  370 SNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLERTYEISGWNDSTEFLAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGP 463          
BLAST of CV887293 vs. ExPASy Swiss-Prot
Match: NOG2_NEUCR (Nucleolar GTP-binding protein 2 OS=Neurospora crassa GN=nog-2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.470e-21
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  557 DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQED 847
            D+  D++L+GVVRV N+++  ++I  VL +VK  H++R Y++K W D   FL  L +  G+LL+GGEPD    AKM+L+D+ RGKIP+F P P +E+
Sbjct:  387 DTPQDLLLRGVVRVENVDNPEQYIPAVLNKVKPHHMERTYELKGWKDHIHFLEMLARKGGRLLKGGEPDVDGVAKMVLNDFMRGKIPWFTPAPEKEE 483          
The following BLAST results are available for this feature:
BLAST of CV887293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NOG2_MOUSE6.741e-3055.36Nucleolar GTP-binding protein 2 OS=Mus musculus GN... [more]
NOG2_HUMAN3.346e-2957.84Nucleolar GTP-binding protein 2 OS=Homo sapiens GN... [more]
NOG2_CRYNV1.114e-2444.52Nucleolar GTP-binding protein 2 OS=Cryptococcus ne... [more]
NOG2_KLULA3.583e-2346.67Nucleolar GTP-binding protein 2 OS=Kluyveromyces l... [more]
NOG2_CRYGA2.322e-2253.33Nucleolar GTP-binding protein 2 OS=Cryptococcus ga... [more]
NOG2_CANGA3.033e-2246.49Nucleolar GTP-binding protein 2 OS=Candida glabrat... [more]
NOG2_YARLI8.825e-2247.96Nucleolar GTP-binding protein 2 OS=Yarrowia lipoly... [more]
NOG2_ASHGO5.720e-2146.39Nucleolar GTP-binding protein 2 OS=Ashbya gossypii... [more]
NOG2_SCHPO7.470e-2148.94Nucleolar GTP-binding protein 2 OS=Schizosaccharom... [more]
NOG2_NEUCR7.470e-2146.39Nucleolar GTP-binding protein 2 OS=Neurospora cras... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030D09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887293 ID=CV887293; Name=CV887293; organism=Citrus sinensis; type=EST; length=866bp
CCTTTTTTTTGGAAACAGTTTCATATTAATCCTATTAATATTCCATAGTG
ATGAAGATTGAAACCGAATTGCACTTAAACAATGTGATCTACTAGGATGA
GATTTAAGGAAATTGACTACATTGACGAACTTACAATTCAACTTGTTGAA
AACCAAAAAATAAAACAATTACCCAAACTACAAAATTTTGATTTGCTTAT
TAATATAAAATAAAACAGCATGCAAAACTGTTTTCTTTCTCCTTTCATTA
TTTCTCTGAGTCACTTGCCGGGGGCTGATCTTCGTCAGATTCCGATTCTG
AATCAGAGTCAGATGGCTGGTCAGATGCCTCCGATTCCGATGGCCGGTCA
GATGCCTTGGCATCCGTGTCTGGATGTTGATCTATTGTCCCATCCTTCAA
CTCATTCTCGCCGAAGAGATCCCTTTGAACAGGGACATTTCTTTGCTGCT
GGGACGACATAACGCTAGCAATTACTTTGAGGGCTGCGGATGCCTGATTG
TTATCGCCAACTGCCTCCTCGTTTAACCCACATACATTGGGTTCCGCTGA
AGAATCGTCTTCTTGATGAGGAGGAGGGACGAAGAAGGGAATCTTACCTC
TCTGCCAGTCATGGAGGATCATCTTTGCCGCTGTCATGAAGTCAGGTTCG
CCACCCCTCAAAAGTTTGCCTGTTGATTTGCACAACTGAAGTAGAAAGTC
ATTTTCGTCAACCCAATCTTTTATCTTATATGCTCTTTTAAGGTGCTCCT
TCTTGACACGTTTTAGTACTTCTCCTATGTGTTCAGCAGCATCCTCCAAG
TTTGTGACACGAACCACTCCCTTCAGTACGATATCCGTTTCAGAGTCCTT
GTTCTGGTAAACAACT
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