CV887284

Overview
NameCV887284
Unique NameCV887284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.239e-98
Identity = 156/184 (84.78%), Postives = 173/184 (94.02%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQPYILQTNV+TGG G++EQRI LWFDP+K++H+YSVLWNMYQIVF VDDVPIRVFKNSKD+GV+FPFNQPMKIYSSLWNADDWATRGGLEKT+W KAPF+ASY+GFHVDGCE SVNAKFCETQGKRWWDQK FQDLDA QY+RL+WVR++YTIYNYC DR RFP P PEC+RDRDI
Sbjct:  110 EFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPECRRDRDI 293          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.121e-97
Identity = 158/185 (85.41%), Postives = 173/185 (93.51%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPS-PECKRDRDI 552
            EFLGNRTGQPYILQTNV+TGGKGD+EQRIYLWFDPTKE+H YS+LWN+YQIVF VD+VPIRVFKNSKDLGV+FPF+QPMKIY+SLWNADDWATRGGLEKTDWSKAPFIA+YKGFH+DGCE SVNAKFC+TQGKRWWDQ  F+DLDA Q+RRLRWVRQKYTIYNYC D  R+P  S PECKRDRDI
Sbjct:  111 EFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDRDI 295          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.572e-95
Identity = 150/184 (81.52%), Postives = 171/184 (92.93%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQPYILQTNV+TGGKGD+EQRIYLWFDPTK +H YSVLWNMYQIVFLVD++PIRVFKN K+LGV+FPFNQPMK+Y+SLWNADDWATRGGLEKTDWSKAPF+A YKGFHVDGCE SVN++FC TQGKRWWDQ  F+DLD++Q+RRL+WVRQK+TIYNYC DR R+P   PEC+R+RDI
Sbjct:  110 EFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQLPPECRRNRDI 293          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.667e-94
Identity = 153/184 (83.15%), Postives = 166/184 (90.22%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQPYILQTNV+TGGKGD+EQRIYLWFDPT ++H YSVLWNMYQIVF VDD PIRVFKNS DLGV+FPFNQPMKIY+SLWNADDWATRGGLEKTDWSKAPFIASYKGFH+DGCE SVNAKFC+TQGKRWWDQ  F+DLDA Q+++L WVR KYTIYNYC DR R+    PEC RDRDI
Sbjct:  109 EFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQVPPECTRDRDI 292          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.743e-92
Identity = 146/184 (79.35%), Postives = 164/184 (89.13%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQPYILQTNV++GGKGD+EQRIYLWFDPTK++H+YSVLWN+Y I F VDD PIRVFKNSKDLGVR+PF+QPMK+YSSLWNADDWATRGG EKTDWSKAPF+ASY+GFHVDGCE S  AKFC TQG RWWDQ  FQDLDA QYRRL WVR+++TIYNYC D  R+   +PECKRDRD+
Sbjct:  110 EFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAPECKRDRDV 293          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.253e-91
Identity = 144/184 (78.26%), Postives = 166/184 (90.22%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQP ILQTNV+TGGKG++EQRIYLWFDP+K +HTYSVLWN+YQIVF VD++PIRVFKN+KDLGVRFPFNQPMK+YSSLWNADDWATRGGLEKT+W+ APFIASY+GFH+DGC+ SV AK+C TQG+ WWDQ  F+DLDA QYRRL+WVR K+TIYNYC DR RFP    EC+RDRD+
Sbjct:  112 EFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAECRRDRDV 295          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.942e-91
Identity = 144/183 (78.69%), Postives = 165/183 (90.16%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRD 549
            EFLGNRTGQP ILQTNV+TGGKG++EQRIYLWFDP+K +HTYS+LWNMYQIVF VD++PIR FKN+KDLGVRFPFNQPMK+YSSLWNADDWATRGGLEKT+W+ APF+ASYKGFH+DGC+ SV AK+C TQG+ WWDQK F+DLDA Q+RRL+WVR K+TIYNYC DR RFP    ECKRDRD
Sbjct:  113 EFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQASVEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPVMPAECKRDRD 295          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.561e-91
Identity = 150/186 (80.65%), Postives = 162/186 (87.10%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSV--NAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQPYILQTNV+TGGKGD+EQRIYLWFDPTK +H+YSVLWN +QIV  VDDVPIR FKNSKDLGV+FPFNQPMKIYSSLW+ADDWATRGGLEKTDWS APF ASY  FHVDGCE +     + C T+G RWWDQKAFQDLDA QYRRLRWVRQKYTIYNYC DR R+PT  PEC +DRDI
Sbjct:  110 EFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCEAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPECTKDRDI 295          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.754e-89
Identity = 145/186 (77.96%), Postives = 162/186 (87.10%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSV--NAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 552
            EFLGNRTGQPYILQTNV+TGGKG++EQRIYLWFDPTK +H+YSVLWN Y IV  VDDVPIR FKNSKDLGV+FPFNQPMKIYSSLW+ADDWATRGGLEKT+W+ APF ASY  FHVDGCE +     + C T+G +WWDQKAFQDLDA QYRRLRWVRQKYT+YNYC D+AR+P P PEC +DRDI
Sbjct:  111 EFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPECTKDRDI 296          
BLAST of CV887284 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 5.782e-63
Identity = 102/179 (56.98%), Postives = 134/179 (74.86%), Query Frame = 1
Query:    1 EFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECK 537
            EFLGNR+GQPY +QTN++  GKGD+EQR+ LWFDP+ ++HTY++LW+   IVF VDDVPIR +KN++   + +P +QPM +YS+LW ADDWATRGGLEK DWSKAPF A YK F ++GC V     FC +    WW+  A+Q L+A + RR RWVR  + +Y+YC DR+RFP P PEC+
Sbjct:  114 EFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVP-GPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECR 291          
The following BLAST results are available for this feature:
BLAST of CV887284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH5_ARATH4.239e-9884.78Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN6.121e-9785.41Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN2.572e-9581.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN1.667e-9483.15Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_WHEAT7.743e-9279.35Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB2.253e-9178.26Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH2.942e-9178.69Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC8.561e-9180.65Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC2.754e-8977.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH5.782e-6356.98Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030D05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887284 ID=CV887284; Name=CV887284; organism=Citrus sinensis; type=EST; length=718bp
GAGTTCTTGGGGAACAGAACCGGGCAGCCATACATTTTGCAGACAAATGT
GTACACTGGAGGAAAGGGAGACAAAGAGCAGAGAATTTATCTTTGGTTTG
ATCCAACCAAAGAGTTTCACACTTACTCAGTTCTCTGGAACATGTATCAG
ATTGTTTTCTTAGTGGACGATGTGCCGATTAGGGTGTTCAAGAACAGCAA
AGATTTGGGAGTGAGGTTTCCATTCAACCAACCCATGAAGATATACTCAA
GCCTGTGGAATGCAGATGACTGGGCAACGAGGGGCGGTTTGGAGAAGACG
GACTGGTCGAAGGCTCCTTTCATAGCCTCCTACAAGGGGTTCCACGTTGA
TGGGTGTGAGGTATCTGTGAACGCCAAGTTCTGTGAGACACAGGGCAAGA
GATGGTGGGATCAGAAGGCGTTCCAAGACCTTGACGCCTACCAGTACAGG
AGACTCAGATGGGTTCGCCAGAAATACACCATCTATAACTACTGCAACGA
TCGTGCCCGCTTCCCTACGCCTTCACCAGAATGCAAACGAGACCGTGACA
TTTAAGCGTCAATCTGAGATTCGCTCTGTGTGTGTACCAAGTATCTTAGT
ATGCCTTTACCATTTATATGTATCAGACGTATTGAAACAGGGCATGAGAG
AGTGTATGTATCCATTTTACTTGCGTTCTTCATTCATATTGTTGCTGCTT
TATTCTTATATGTATTTT
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