CV887267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21 Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 2 Query: 23 LVVATGLGILSLSGPAESLSCSDDCXXXXXXXXRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400 +V+A L S + PA + + ++ C KV + PCLH++KG+ K PSK+CC G KK+S+ VKT K+ CKCI R +G+ + +PKKC I TLPP+ A CSKI Sbjct: 10 VVIAAALAWTSSAEPAPAPAPGEEA-----------CGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKI 124
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.030e-20 Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 2 Query: 131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400 C KV PCL ++KG+ K PSK CC G KK+S+ VKT K+ CKCI +G+ + +PKKCGI TLPP+ A CSKI Sbjct: 35 CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12 Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 2 Query: 125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 403 V C +V PCL Y +G+ PS CC GV+ ++ +T AD++A C C++ RG+ SIP KCG++ + T CS+++ Sbjct: 31 VTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPY-TISTSTDCSRVS 122
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12 Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 2 Query: 125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400 + C +V APC+ Y +G+ PS CC GV+ ++ +T AD++A C C++ GV SIP KCG++ + T CS++ Sbjct: 29 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPY-TISTSTDCSRV 119
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT12_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12 Identity = 31/91 (34.07%), Postives = 46/91 (50.55%), Query Frame = 2 Query: 131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKI 400 C V + PCL +++GK K PSK CC G K++ KT + C+CIQ ++ + +PK CGI + LPP+D C + Sbjct: 41 CGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGLQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTL 131
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12 Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 2 Query: 131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKI 400 C + + PCL +++GK K PSK CC G K++ KT + C+CIQ ++ + +PK CGI + LPP+D C + Sbjct: 4 CGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTV 94
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12 Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 2 Query: 125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 403 + C +V A CL Y +G+ PS CC GV+ ++ +T AD++A C C++ RG+ SIP KCG++ + T CS+++ Sbjct: 27 ISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPY-TISTSTDCSRVS 118
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12 Identity = 31/91 (34.07%), Postives = 45/91 (49.45%), Query Frame = 2 Query: 131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKI 400 C V PCL +++GK K PSK CC G K++ KT + C+CIQ ++ + +PK CGI + LPP+D C + Sbjct: 40 CGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTL 130
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11 Identity = 30/92 (32.61%), Postives = 44/92 (47.83%), Query Frame = 2 Query: 125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400 V C V APCL Y+ G+ PS CC GV+ ++ + AD++ C C++ + SIP KCG++ P+ CSKI Sbjct: 30 VSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAF-PISTSVDCSKI 120
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11 Identity = 30/92 (32.61%), Postives = 44/92 (47.83%), Query Frame = 2 Query: 125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400 V C V APCL Y+ G+ PS CC GV+ ++ + AD++ C C++ + SIP KCG++ P+ CSKI Sbjct: 30 VSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAF-PISTSVDCSKI 120 The following BLAST results are available for this feature:
BLAST of CV887267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887267 ID=CV887267; Name=CV887267; organism=Citrus sinensis; type=EST; length=647bpback to top |