CV887267

Overview
NameCV887267
Unique NameCV887267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   23 LVVATGLGILSLSGPAESLSCSDDCXXXXXXXXRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400
            +V+A  L   S + PA + +  ++            C KV +   PCLH++KG+ K PSK+CC G KK+S+ VKT   K+  CKCI R  +G+       +  +PKKC I  TLPP+ A   CSKI
Sbjct:   10 VVIAAALAWTSSAEPAPAPAPGEEA-----------CGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKI 124          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.030e-20
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400
            C KV     PCL ++KG+ K PSK CC G KK+S+ VKT   K+  CKCI    +G+       +  +PKKCGI  TLPP+ A   CSKI
Sbjct:   35 CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 2
Query:  125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 403
            V C +V     PCL Y +G+   PS  CC GV+ ++   +T AD++A C C++   RG+         SIP KCG++     +   T CS+++
Sbjct:   31 VTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPY-TISTSTDCSRVS 122          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 2
Query:  125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400
            + C +V    APC+ Y +G+   PS  CC GV+ ++   +T AD++A C C++    GV         SIP KCG++     +   T CS++
Sbjct:   29 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPY-TISTSTDCSRV 119          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT12_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12
Identity = 31/91 (34.07%), Postives = 46/91 (50.55%), Query Frame = 2
Query:  131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKI 400
            C  V +   PCL +++GK K PSK CC G K++    KT   +   C+CIQ  ++         +  +PK CGI +  LPP+D    C  +
Sbjct:   41 CGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGLQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTL 131          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 2
Query:  131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKI 400
            C  + +   PCL +++GK K PSK CC G K++    KT   +   C+CIQ  ++         +  +PK CGI +  LPP+D    C  +
Sbjct:    4 CGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTV 94          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 2
Query:  125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 403
            + C +V    A CL Y +G+   PS  CC GV+ ++   +T AD++A C C++   RG+         SIP KCG++     +   T CS+++
Sbjct:   27 ISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPY-TISTSTDCSRVS 118          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 31/91 (34.07%), Postives = 45/91 (49.45%), Query Frame = 2
Query:  131 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKI 400
            C  V     PCL +++GK K PSK CC G K++    KT   +   C+CIQ  ++         +  +PK CGI +  LPP+D    C  +
Sbjct:   40 CGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTL 130          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 30/92 (32.61%), Postives = 44/92 (47.83%), Query Frame = 2
Query:  125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400
            V C  V    APCL Y+ G+   PS  CC GV+ ++    + AD++  C C++       +       SIP KCG++    P+     CSKI
Sbjct:   30 VSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAF-PISTSVDCSKI 120          
BLAST of CV887267 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 30/92 (32.61%), Postives = 44/92 (47.83%), Query Frame = 2
Query:  125 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 400
            V C  V    APCL Y+ G+   PS  CC GV+ ++    + AD++  C C++       +       SIP KCG++    P+     CSKI
Sbjct:   30 VSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAF-PISTSVDCSKI 120          
The following BLAST results are available for this feature:
BLAST of CV887267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NLT21_PARJU2.667e-2138.89Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT22_PARJU5.030e-2046.67Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTP2_SORBI1.327e-1233.33Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE2.263e-1232.61Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLT12_PARJU2.956e-1234.07Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT11_PARJU5.042e-1232.97Probable non-specific lipid-transfer protein (Frag... [more]
NLTP1_SORBI8.600e-1232.26Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLT13_PARJU8.600e-1234.07Probable non-specific lipid-transfer protein 1 OS=... [more]
NLTP3_ORYSJ1.916e-1132.61Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.916e-1132.61Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887267 ID=CV887267; Name=CV887267; organism=Citrus sinensis; type=EST; length=647bp
GAATCGGCCAGCAATTGTGTTCCTGGTGGTAGCCACTGGTCTTGGAATAC
TCTCATTATCAGGCCCAGCCGAATCATTATCGTGTTCTGATGACTGCCCT
GCACCCAATCCCCCTCCCCCTAGGGTTGAGTGTCATAAGGTGGAGAAAAG
GTTTGCTCCATGCCTTCATTATATTAAAGGTAAAAGCAAACACCCCTCAA
AAGATTGTTGCCGCGGCGTTAAGAAAATTTCTAAGCACGTAAAAACCAAG
GCGGATAAAAAAGCTTTATGCAAATGTATTCAGAGATGTTTGCGGGGTGT
TGACCATTATGCTAAAAGTTGCATCCCTTCAATTCCCAAGAAATGTGGAA
TCAATTTTACTCTCCCTCCAGTTGATGCTAAAACCAAGTGTTCCAAGATT
ACTATGTTTGATTAATTGCTGCGGGATCACTTGTTCGTGGAGATGTTTCC
CTGCATGTTGCGCATGCCAACAACAAGAAGTATTTGTTTTTTTTTATATA
TATCGCAATACGCAAAGACGTACGCAAATAAATTCTGTCCAAGGACATGC
AGCAGCTGGCTAATGAGTCTGTCTAATAATAATTGATAAACGATGTCGCG
TAAACTAGAGTGGCTATATATGTATTTGATAGATATACTTGTAAAAA
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