EL492507

Overview
NameEL492507
Unique NameEL492507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length177
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:268..444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_MAIZE (ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.132e-20
Identity = 47/58 (81.03%), Postives = 56/58 (96.55%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA EL+KNLS+AYN++RQAKITGE
Sbjct:  289 LLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLSIAYNRQRQAKITGE 346          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_TOBAC (ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.950e-19
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA ELKKNLS  YN++RQAKITGE
Sbjct:  308 LLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQAKITGE 365          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG2_ARATH (ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.547e-19
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            MMPLY+NSQILRALQES ASE+A+RM+AMS ATDNA ELKKNL++AYN+ RQAKITGE
Sbjct:  315 MMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLTMAYNRARQAKITGE 372          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_SPIOL (ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.264e-18
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+NSQILRALQES ASE+AARM+AMS ATDNA+ELKK LS+ YN+ RQAKITGE
Sbjct:  295 LLPLYLNSQILRALQESLASELAARMTAMSNATDNANELKKTLSINYNRARQAKITGE 352          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG1_ARATH (ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/58 (75.86%), Postives = 55/58 (94.83%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+NSQILRALQES ASE+AARMSAMS+A+DNA +LKK+LS+ YN++RQAKITGE
Sbjct:  304 LLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGE 361          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_PEA (ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.708e-15
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+NSQILR LQES ASE+AARMSAMS+A DNA ELK +L+  YN+  QAKITGE
Sbjct:  305 LLPLYLNSQILRPLQESLASELAARMSAMSSAFDNASELKTDLTRVYNRATQAKITGE 362          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP7 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.478e-15
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+N+Q+LRALQES ASE+AARM+AMS+A+DNA EL K LS++YN+ RQA IT E
Sbjct:  246 LLPLYLNNQLLRALQESAASELAARMTAMSSASDNAGELIKTLSLSYNKARQAAITQE 303          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_CHLRE (ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.478e-15
Identity = 38/58 (65.52%), Postives = 51/58 (87.93%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLYM+S +LR+LQE+ ASE+AARM+AM+ A+DNA ELKK L+V YN++RQAKIT E
Sbjct:  288 LLPLYMSSCLLRSLQEALASELAARMNAMNNASDNAKELKKGLTVQYNKQRQAKITQE 345          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP4 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.222e-14
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+N+Q+LRALQES ASE+AARM+AM+ A+DNA EL K LS+ YN+ RQA IT E
Sbjct:  246 LLPLYLNNQLLRALQESAASELAARMTAMNNASDNAKELIKGLSMTYNKARQAAITQE 303          
BLAST of EL492507 vs. ExPASy Swiss-Prot
Match: ATPG_ANAVT (ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.222e-14
Identity = 38/58 (65.52%), Postives = 51/58 (87.93%), Query Frame = 3
Query:    3 MMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGE 176
            ++PLY+++Q+LRALQES ASE+AARM+AMS A+DNA EL K+LS++YN+ RQA IT E
Sbjct:  246 LLPLYLSNQLLRALQESAASELAARMTAMSNASDNAGELIKSLSLSYNKARQAAITQE 303          
The following BLAST results are available for this feature:
BLAST of EL492507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ATPG_MAIZE5.132e-2081.03ATP synthase subunit gamma, chloroplastic OS=Zea m... [more]
ATPG_TOBAC1.950e-1981.03ATP synthase gamma chain, chloroplastic OS=Nicotia... [more]
ATPG2_ARATH2.547e-1981.03ATP synthase gamma chain 2, chloroplastic OS=Arabi... [more]
ATPG_SPIOL1.264e-1877.59ATP synthase gamma chain, chloroplastic OS=Spinaci... [more]
ATPG1_ARATH1.651e-1875.86ATP synthase gamma chain 1, chloroplastic OS=Arabi... [more]
ATPG_PEA1.708e-1570.69ATP synthase gamma chain, chloroplastic OS=Pisum s... [more]
ATPG_CYAP78.478e-1567.24ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_CHLRE8.478e-1565.52ATP synthase gamma chain, chloroplastic OS=Chlamyd... [more]
ATPG_CYAP43.222e-1465.52ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_ANAVT3.222e-1465.52ATP synthase gamma chain OS=Anabaena variabilis (s... [more]

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Properties
Property NameValue
Genbank descriptionC1680 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1680, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492507 ID=EL492507; Name=EL492507; organism=Citrus sinensis; type=EST; length=177bp
CGATGATGCCACTCTATATGAATAGTCAGATTTTGAGGGCATTGCAGGAG
TCATTCGCTAGTGAGGTTGCAGCGAGGATGAGTGCCATGAGTACTGCTAC
GGATAATGCTGATGAGTTGAAGAAAAATCTTTCAGTTGCTTATAACCAAG
AACGCCAGGCTAAAATCACTGGTGAAC
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