CV887254

Overview
NameCV887254
Unique NameCV887254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV887254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_WHEAT1.402e-17100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN1.402e-17100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU1.402e-17100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC1.402e-17100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR1.402e-17100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA1.402e-17100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ1.402e-17100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY1.402e-17100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE1.402e-17100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO1.402e-17100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887254 ID=CV887254; Name=CV887254; organism=Citrus sinensis; type=EST; length=173bp
TTTCGGCGAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCT
GGATCTTGGCCTTGACATTGTCGATGGTGTCCGATGATTCGACCTCTAGG
GTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATGGCTGCAGA
TGAGGAGAGACCCAGCAAATCCT
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