CV887234

Overview
NameCV887234
Unique NameCV887234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887234 vs. ExPASy Swiss-Prot
Match: ELC_ARATH (Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.308e-58
Identity = 107/158 (67.72%), Postives = 133/158 (84.18%), Query Frame = -3
Query:  307 TEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILEAWVRENQSKNIDLKDLNVDNAFECVDVLSKQMLDCTSADLAIEDVVYALDKALQEGAVPFDSYLRNVRLLSREQFFH 780
            ++D  EVFKRNA+NK+VEMVH+D+  MR+ARE E E L S QA L+RRE+E++ GLKE+ +E+E LEQQLQI+ MN+DIL++WVRENQ K  +L DL+VDNAFEC D LSKQML+CT+ DLAIED +Y+LDK+ Q+G VPFD YLRNVRLLSREQFFH
Sbjct:  216 SDDAAEVFKRNAINKMVEMVHSDLVSMRRAREAEAEELLSLQAGLKRREDELNIGLKEMVEEKETLEQQLQIISMNTDILDSWVRENQGKTKNLVDLDVDNAFECGDTLSKQMLECTALDLAIEDAIYSLDKSFQDGVVPFDQYLRNVRLLSREQFFH 373          
BLAST of CV887234 vs. ExPASy Swiss-Prot
Match: ELCL_ARATH (Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.040e-55
Identity = 103/159 (64.78%), Postives = 133/159 (83.65%), Query Frame = -3
Query:  307 TEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILEAWVRENQSKNID-LKDLNVDNAFECVDVLSKQMLDCTSADLAIEDVVYALDKALQEGAVPFDSYLRNVRLLSREQFFH 780
            T+D  EV+K+NA+N++VEMVH DI  MR AREVE EGL S Q+ L+RREEEI+ G KE+  E+E LEQQLQ++ MN+D+L +W+RENQ K  D L DL+VD++FEC+D LSKQML+CT+ DLAIEDVVY++DK+ ++G++PFD YLRNVRLLSREQFFH
Sbjct:  185 TDDAAEVYKKNAINRIVEMVHGDIVLMRSAREVETEGLLSLQSDLKRREEEINNGFKEMVIEKETLEQQLQVIAMNTDVLGSWIRENQGKAKDLLVDLDVDDSFECIDSLSKQMLECTALDLAIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSREQFFH 343          
BLAST of CV887234 vs. ExPASy Swiss-Prot
Match: TS101_DICDI (ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.001e-12
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  313 FSTQALLRRREEEIDRGLKELQD----EREGLEQQL-----QIVLMNSDI--LEAWVRENQSKNIDLKDLNVDNAFECVDVLSKQMLDCTSADLAIEDVVYALDKALQEGAVPFDSYLRNVRLLSREQF 666
            + T +L  +  E  ++ L+EL      E+E L  QL     QI  +N +I  LE W+ EN   +    ++++D      D LSKQ+L   S D  IED++Y LDKAL    +  + YL+NVR LSR+QF
Sbjct:  310 YDTTSLEIKDFEAHNKSLEELSKKKLLEKEELSNQLATYNSQIDQLNENIEQLEKWINENDKSD---SNIDIDQILGPKDSLSKQLLKLVSDDSTIEDLLYYLDKALHSNRISLEEYLKNVRSLSRDQF 435          
The following BLAST results are available for this feature:
BLAST of CV887234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELC_ARATH8.308e-5867.72Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV... [more]
ELCL_ARATH5.040e-5564.78Protein ELC-like OS=Arabidopsis thaliana GN=ELCL P... [more]
TS101_DICDI9.001e-1237.21ESCRT-I complex subunit tsg101 OS=Dictyostelium di... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887234 ID=CV887234; Name=CV887234; organism=Citrus sinensis; type=EST; length=911bp
ATTTAATAAGTAAACACTGTAATTCAGAGATGAGTGTAGTATATCATTCA
TGGCAAATGGTATTATTTTCTCCTATCAATACAATGCACAAAGAGCAATC
TAGAATGAAAACTTATATATCAAAATTAGTTAAAGACCAAAAAATATAAC
ATGAACAAATTTTCACAATAATCTAACCTCAAACTGATACACAATCTTGT
ATCAGCTAGTAAGTTAGTTTCATGTGGCATAATGCGGAGACCTAGAAGCC
ATACTAGCAACCTGAGCCTGCATTTGAGCTGCGCGAACTTTTGCAGCTGT
GGCCCGATGAAAAAACTGCTCTCTTGACAACAGCCTCACATTCCTCAAAT
AAGAATCAAACGGCACAGCACCCTCTTGCAGCGCCTTATCCAAGGCATAA
ACCACATCTTCAATTGCCAAATCGGCAGAGGTACAATCCAACATTTGCTT
AGACAACACGTCCACGCACTCAAATGCATTATCCACATTCAAATCTTTCA
AATCAATGTTCTTGCTTTGGTTTTCCCTCACCCACGCTTCTAGTATATCG
CTGTTCATTAACACAATCTGCAATTGCTGCTCTAATCCTTCCCTTTCATC
TTGCAATTCCTTTAACCCTCTATCGATTTCCTCTTCCCTGCGCCTTAACA
AAGCTTGCGTGCTGAACAAGCCTTCCACCTCCACCTCACGCGCTTTCCTC
ATCCCCGTAATATCTGCGTGCACCATTTCGACCAACTTGTTCACAGCGTT
CCGTTTAAAAACCTCCGTCTGATCCTCCGTCTGCGGCTGAGGCTGAGGCC
GGCCACCGTACGGAGACGGAGGAAACGGTCGCGCTGGCTGAGGTCTCGCC
TGTGGTGAGGGCGAGGGTCCATAATTCGACATAACGGCGGGATTGCTTTG
GTTATGGCTAG
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