CV887232

Overview
NameCV887232
Unique NameCV887232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.505e-86
Identity = 146/181 (80.66%), Postives = 159/181 (87.85%), Query Frame = -3
Query:  375 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQV 917
            LFNNG+SCGACFEI+C ND +WC PGSI VTATNFC         AGGWCNPPQQHFDLSQPVF++IAQY+AGIVPV+YRRVPC R+GGIRFTINGHSYFNLVLITNVGGAGDV +  +KGSRT WQ MSRNWGQNWQSNSYLNGQSLSFKVTTSDG T+VSNNVA AGWSFGQTF+G Q+
Sbjct:   69 LFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQL 249          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.520e-83
Identity = 141/180 (78.33%), Postives = 156/180 (86.67%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFNNG+SCG+CFEI+C ND +WC PGSI VTATNFC          GGWCNPP +HFDL+QPVF++IAQY+AGIVPVSYRRVPC R+GGIRFTINGHSYFNLVLITNVGGAGDV + +IKGSRT WQ MSRNWGQNWQSNSYLNGQ+LSFKVTTSDG TVVS N APAGWS+GQTF+G Q
Sbjct:   68 LFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQ 247          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 3.385e-83
Identity = 140/180 (77.78%), Postives = 155/180 (86.11%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFNNG+SCGACFEIKC +D  WC PG+I VTATNFC         AGGWCNPP  HFDLSQPVF++IAQYKAG+VPVSYRRVPC R+GGIRFTINGHSYFNLVL+TNVGGAGDV +V++KGSRT WQ MSRNWGQNWQSN+ LNGQ+LSFKVT SDG TVVSNN+APA WSFGQTF+G Q
Sbjct:   72 LFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQ 251          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 9.541e-78
Identity = 133/181 (73.48%), Postives = 152/181 (83.98%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFNNG++CGAC+E+KC +DPRWC   +I VTATNFC          GGWCNPP QHFDL++P F QIAQY+AGIVPVS+RRVPC +KGGIRFTINGHSYFNLVLI+NVGGAGDV AVSIKGS+T  WQ MSRNWGQNWQSNSY+N QSLSF+VTTSDG T+VSN+VAP+ W FGQT+ G Q
Sbjct:   72 LFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQ 252          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.627e-77
Identity = 132/180 (73.33%), Postives = 148/180 (82.22%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFN G SCGACF+IKCV+DP+WC  G+I VT TNFC         AGGWCNPPQ HFDL+QP+F +IAQYKAG+VPV YRRV C RKGGIRFTINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN+ L+GQ+LSFKVTTSDG TV+SNN  P  WSFGQT++G Q
Sbjct:   71 LFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQ 250          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.799e-76
Identity = 127/180 (70.56%), Postives = 146/180 (81.11%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFN+G +CG+C+E++C ND +WC PGS+ VTATN C          GGWCNPP+ HFD+++P F QI  Y+AGIVPVSYRRVPC +KGGIRFTINGHSYFNLVL+TNV G GDV++VSIKGS T WQPMSRNWGQNWQSNSYL+GQSLSF+V  SDG TV SNNV PAGW FGQTF G Q
Sbjct:   71 LFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQ 250          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.560e-75
Identity = 126/180 (70.00%), Postives = 147/180 (81.67%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFN+G +CG+C+E++C N    C PGSI VTATNFC          GGWCNPP+ HFD+++P F  IAQY+AGIVPVS+RRVPC +KGG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKGSRT WQPMSRNWGQNWQSN++L+GQSLSF+VT SDG TV SNNVA  GW FGQTF G Q
Sbjct:   66 LFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQ 245          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.560e-75
Identity = 126/180 (70.00%), Postives = 147/180 (81.67%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFN+G +CG+C+E++C N    C PGSI VTATNFC          GGWCNPP+ HFD+++P F  IAQY+AGIVPVS+RRVPC +KGG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKGSRT WQPMSRNWGQNWQSN++L+GQSLSF+VT SDG TV SNNVA  GW FGQTF G Q
Sbjct:   66 LFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQ 245          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 3.752e-74
Identity = 127/181 (70.17%), Postives = 147/181 (81.22%), Query Frame = -3
Query:  378 LFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 917
            LFN+G  CGACFE++C +DP WC PGSI V+ATNFC          GGWCNPP +HFDL++P F QIAQY+AGIVPV++RRVPC + GGIRFTING+ YF+LVLITNVGGAGD+RAVS+KGS+TD WQ MSRNWGQNWQSN+YL GQSLSF+VT SDG TVVS +V P  W FGQTF G Q
Sbjct:   74 LFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQ 254          
BLAST of CV887232 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.092e-73
Identity = 123/180 (68.33%), Postives = 144/180 (80.00%), Query Frame = -3
Query:  384 LFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 917
            LFNNG+SCG+CFE+KC+NDP WC PG  SI +TATNFC          GGWCNPP++HFDL+ P+F  IA+YKAGIVPVSYRR+PC +KGGIRFTING  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF+V TSDG +  SNN+AP+ W FGQT+SG
Sbjct:   74 LFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSG 253          
The following BLAST results are available for this feature:
BLAST of CV887232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXPA1_ARATH2.505e-8680.66Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH1.520e-8378.33Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH3.385e-8377.78Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA8_ARATH9.541e-7873.48Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH1.627e-7773.33Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA2_ORYSJ1.799e-7670.56Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ7.560e-7570.00Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI7.560e-7570.00Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ARATH3.752e-7470.17Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA9_ARATH1.092e-7368.33Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887232 ID=CV887232; Name=CV887232; organism=Citrus sinensis; type=EST; length=919bp
CTGATACATAATTTTATTCACCAAAGTCACAAGACATAACATTGATCATT
AAAAAAAAAAATTAAAGACACATCCAGCAAAAGGCTAATAATATTATAAG
CACAGTTGCTCAGTTTATAGATGGCGGGTGGTACATGCCCTCCACTGCCA
GCCAATTTCTGTCTCTGCCAATTTCAAAATTAGAGCAGAGCAGAAACCAC
CGTACTAGAATACATAATCAAAATATAAAACGCCAAAGGGCCATTTCAAA
ATAAGCCCTTTGTCATTTTGATACCAGATTCAACTAATTAACGCTATTAC
ACTCATTATTTTATACTTGAAAATGTGAAAAAAAAAAACTGCTGGATTTT
GGAGGCTGAGTTTCAACTTCAGGGAACTTGCAGGCCACTGAAGGTTTGGC
CAAAGGACCAGCCAGCTGGGGCAACATTGTTAGAGACAACAGTGTGGCCA
TCACTTGTGGTGACCTTAAATGAGAGGCTTTGGCCATTGAGGTAACTGTT
ACTTTGCCAGTTTTGACCCCAGTTCCTTGACATGGGTTGCCAATCAGTTC
TTGACCCTTTGATTGAAACAGCACGCACATCACCAGCGCCTCCGACGTTT
GTGATTAGGACTAAGTTGAAGTAAGAATGGCCGTTGATCGTGAATCTGAT
GCCTCCCTTCCTACTGCATGGAACCCTTCTGTAAGACACAGGTACTATCC
CAGCTTTGTACTGAGCAATTTGTTCAAACACAGGCTGAGAGAGGTCAAAA
TGTTGCTGGGGAGGATTGCACCAGCCACCGGCATTGTTTGGGAGAGCATT
ATTTGGAGGGCAAAAATTTGTGGCAGTAACAAAAATGGAGCCCGGACGGC
ACCATCTTGGGTCATTAACACACTTGATCTCAAAACAAGCCCCACAGCTC
ATGCCATTGTTGAAAAGTG
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