CV887228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13 Identity = 34/70 (48.57%), Postives = 54/70 (77.14%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891 MGR K+ +++IEN QVT++KRR+G++KKA+E+SVLCD +V ++FSP GKL +Y++ R++ I R+ Sbjct: 1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERY 70
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12 Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891 MGR K+ +++IEN QVT++KRR G++KKANE+SVLCD +V L++FS GKL KY++ ++ I R+ Sbjct: 1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERY 70
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12 Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+ +++IEN QVT++KRR G++KKA+ELSVLCD ++GL++FS SGKL +YSS+ Sbjct: 1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12 Identity = 36/72 (50.00%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSR-RIEDIFLRFI 894 MGR ++ ++KIEN QVT++KRR G++KKANEL++LCD +G+++FS +GK+ +YSS RI +IF R++ Sbjct: 1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYL 72
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12 Identity = 32/60 (53.33%), Postives = 51/60 (85.00%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+++++I+N + QVT++KRR+GI KKA EL++LCD +VGL++FS +G+L +YSS+ Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 M R K+ ++KI+N A QVT++KRR G+ KKA ELSVLCD DV L++FS +GKL YSSS Sbjct: 1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12 Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKY-SSSRRIEDIFLRFI 894 MGR K+ ++KIEN A QVT++KRR G++KK ELS+LCD +GL++FS +GKL+++ S R+ + R++ Sbjct: 1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYL 72
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12 Identity = 31/60 (51.67%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+++++I+N + QVT++KRR+G++KKA ELS+LCD +VGL++FS +G+L ++SS+ Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12 Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891 MGR + +++IEN QVT++KRR+G++KKA+E+SVLCD DV L++FS GKL ++SS +E I R+ Sbjct: 1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERY 70
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12 Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891 MGR + +++IEN QVT++KRR+G++KKA+E+SVLCD DV L++FS GKL ++SS +E I R+ Sbjct: 1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERY 70 The following BLAST results are available for this feature:
BLAST of CV887228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887228 ID=CV887228; Name=CV887228; organism=Citrus sinensis; type=EST; length=902bpback to top |