CV887228

Overview
NameCV887228
Unique NameCV887228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 34/70 (48.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891
            MGR K+ +++IEN    QVT++KRR+G++KKA+E+SVLCD +V  ++FSP GKL +Y++  R++ I  R+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERY 70          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891
            MGR K+ +++IEN    QVT++KRR G++KKANE+SVLCD +V L++FS  GKL KY++   ++ I  R+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERY 70          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+ +++IEN    QVT++KRR G++KKA+ELSVLCD ++GL++FS SGKL +YSS+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12
Identity = 36/72 (50.00%), Postives = 56/72 (77.78%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSR-RIEDIFLRFI 894
            MGR ++ ++KIEN    QVT++KRR G++KKANEL++LCD  +G+++FS +GK+ +YSS   RI +IF R++
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYL 72          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12
Identity = 32/60 (53.33%), Postives = 51/60 (85.00%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+++++I+N  + QVT++KRR+GI KKA EL++LCD +VGL++FS +G+L +YSS+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            M R K+ ++KI+N  A QVT++KRR G+ KKA ELSVLCD DV L++FS +GKL  YSSS
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKY-SSSRRIEDIFLRFI 894
            MGR K+ ++KIEN  A QVT++KRR G++KK  ELS+LCD  +GL++FS +GKL+++ S   R+  +  R++
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYL 72          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 31/60 (51.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+++++I+N  + QVT++KRR+G++KKA ELS+LCD +VGL++FS +G+L ++SS+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891
            MGR  + +++IEN    QVT++KRR+G++KKA+E+SVLCD DV L++FS  GKL ++SS   +E I  R+
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERY 70          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 891
            MGR  + +++IEN    QVT++KRR+G++KKA+E+SVLCD DV L++FS  GKL ++SS   +E I  R+
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERY 70          
The following BLAST results are available for this feature:
BLAST of CV887228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
MAD15_ORYSJ4.696e-1348.57MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD14_ORYSI1.046e-1250.00MADS-box transcription factor 14 OS=Oryza sativa s... [more]
GGM13_GNEGN1.046e-1258.33MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD31_ORYSJ1.784e-1250.00MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD27_ORYSJ1.784e-1253.33MADS-box transcription factor 27 OS=Oryza sativa s... [more]
JOIN_SOLLC1.784e-1260.00MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
TT16_ARATH2.331e-1247.22Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD57_ORYSJ3.044e-1251.67MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD18_ORYSJ3.044e-1250.00MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI3.044e-1250.00MADS-box transcription factor 18 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887228 ID=CV887228; Name=CV887228; organism=Citrus sinensis; type=EST; length=902bp
GTTTGTGATATGCTAGGAGCTTACAAATTCCCAAATTGCAGACAAGTTAA
AAGAAAATCCGATTACCAATATTCCAGGAGAGTCGTCATATTGCATATCA
ACTCCCTTGATCACTTCTGATACCGTCGAGGTTCATAGAAAAATAAAAAA
AGAAAATTCCTTGATCACAGACATAGTAGGAGAAGCTGAAATTAACGTAG
AACTGAAACTGCAATAGCCGCTCACAAACCCTTCCACAGATTCATTAGCA
ATCCAATGTAATCCAGAGGAGCTGGCAAATGATGATTCAAGAAAAATGCA
TGGCGGAGCTTGATTCATCGCTAGCCTTGCCTTGGCTCGGCTTCTTCTTC
TTCTTCTTATAAGGGATCCCTCTAGCCTTAGCTTGGCACTCCCTCACTTC
CCTTAAATAAACCCTTATCGCGCCACTAGCGAAAGGATTTGTCTCCGGCG
ATCCTCCATTCTCTTCATAGGCAGCTCGAAGCCGACCGATGAGAGCATCA
AGGCTGCCCCAAGCTTGCCGTAGAGGGCAAGTACAAGGAGCCGGCGGCTC
GGGCTGGCCATAAAACATGCAGCCTTGGAGATGAACCTTTGTCTTGCCAA
ATTGATCAAGATAGCGAAGAAAGTCAAGCACATGATTGCAACTGCACTGA
GACAAAGTTTTGCTTTCAACTTTTGTTAATCATGGGTCGTAGGAAGCTCC
TTATGCAGAAAATTGAGAATTATCCTGCTCTCCAAGTAACATATACGAAG
CGCAGAGATGGGATTGTTAAGAAGGCCAATGAATTATCAGTACTGTGTGA
TACTGATGTTGGCCTCCTTATGTTTTCTCCCAGTGGTAAACTGACAAAAT
ATTCTAGCAGTAGAAGGATTGAGGATATATTTCTTCGCTTTATATGTGAT
GA
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