CV887226

Overview
NameCV887226
Unique NameCV887226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 75/238 (31.51%), Postives = 128/238 (53.78%), Query Frame = -1
Query:  143 APSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQV 829
            A +Y+++P+   FF+ NG ++++  G FFL+WYS++LI HG+ +L  A+  F    V+I  K+  IH WY   SH +ELTAG YN A RDGY  +A M A++   +    +++ D  QP E+ S+P+ L+ Q+ ++  K  ++V+G+N+        + QM  N+    V         +   TY R+       ++F  F KFV+     ++H D  P    ++ +V   +N+ I +
Sbjct:  238 AGTYNDTPDKTEFFRPNG-TYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVK-----KMHADLDPSPNAISPAVLERSNSAITI 469          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.602e-28
Identity = 75/241 (31.12%), Postives = 122/241 (50.62%), Query Frame = -1
Query:  146 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLN-QLELHGDDLPVEEEVTESVHTNANTNIQ 838
            P DA  Y++ P    FFK +G ++ S  G FF++WYS++LI HG+ +L  A+  F    V++  K+  IH  Y   SH +ELTAG YN  KRDGY  +A M +K+   +    +++ D     E+ S+P+ L+ ++ +   K G+EV+G+N+  T    G+ Q+  N     V         +  FTY R+    F   +F  F K VR ++   +  GD      E+     +N+   ++
Sbjct:  235 PEDAGEYNDKPEETGFFKKDG-TYVSEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMHADQDYCGDAAKYGHEIVPLKTSNSQLTLE 474          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.155e-27
Identity = 70/220 (31.82%), Postives = 118/220 (53.64%), Query Frame = -1
Query:  206 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDD 838
            P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V +  K+  IH WYK ++H +ELTAG YN   RDGY  +A+M +++   +    +++ D  Q  ++ S+P+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV  ++  + H DD
Sbjct:  233 PDDAGTYNDIPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMHADQSHCDD 451          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.793e-27
Identity = 70/212 (33.02%), Postives = 112/212 (52.83%), Query Frame = -1
Query:  230 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF---------EQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 838
            P DA  Y+++P    FFKDNG ++ +  G FFLSWYS++LI HG+ +L  A+  F    V +  KI  IH WY+  +H +ELTAG YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ V+ +N+        +         + + KN   E+ +  FTY R+       +++ +F  FV  ++
Sbjct:  230 PDDAGEYNDTPEKTQFFKDNG-TYLTEKGKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 70/219 (31.96%), Postives = 115/219 (52.51%), Query Frame = -1
Query:  209 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 838
            P DA  Y++ P S  FFK NG ++ +  G FFL+WYS++L++HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG YN   RDGY  +A M +++   +    +++ D  QP ++ S P+ L+ Q+ +   +  + V+G+N+        + Q+  N   + V       + +F  TY R+        +F  F KFV     L++H D
Sbjct:  233 PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 445          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 72/236 (30.51%), Postives = 121/236 (51.27%), Query Frame = -1
Query:  191 DAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF---------EQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN-------------QLELHGDDLPVEE 832
            DA +Y+++P    FF DNG ++++  G FFL+WYS++LI HG+ +L  A+  F    V +  K+  IH WY   +H +ELTAG YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ ++ +N+        +         + + KN   E+ +  FTY R+    F  +++ +F  FVR ++              LE    ++P+EE
Sbjct:  232 DAGTYNDTPEKTQFFADNG-TYQTDKGKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEE 466          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 69/219 (31.51%), Postives = 117/219 (53.42%), Query Frame = -1
Query:  209 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 838
            P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V++  K+  IH WYK ++H +ELTAG YN   RDGY  +A+M +++   +    +++ D  Q  ++ S P+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV     +++H D
Sbjct:  233 PDDAGTYNDVPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFV-----VKMHAD 445          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 70/218 (32.11%), Postives = 112/218 (51.38%), Query Frame = -1
Query:  230 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 838
            P+DA  Y+++P    FF+DNG ++ +  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N               LFG      FTY R+       +++ +F  FV  ++
Sbjct:  230 PNDAGQYNDTPERTQFFRDNG-TYLTEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 70/218 (32.11%), Postives = 111/218 (50.92%), Query Frame = -1
Query:  230 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 838
            P+D   Y+++P    FF+DNG ++ S  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N               LFG      FTY R+       +++ +F  FV  ++
Sbjct:  230 PNDVGQYNDTPERTQFFRDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CV887226 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.699e-26
Identity = 69/219 (31.51%), Postives = 116/219 (52.97%), Query Frame = -1
Query:  209 PHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 838
            P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG YN   RDGY  +A++ +++   +    +++ D  Q  ++ SSP+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV     +++H D
Sbjct:  233 PDDAGTYNDVPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFV-----VKMHAD 445          
The following BLAST results are available for this feature:
BLAST of CV887226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_IPOBA1.893e-2931.51Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_ARATH1.602e-2831.12Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_TRIRP5.155e-2731.82Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_WHEAT8.793e-2733.02Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_SOYBN1.148e-2631.96Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE1.148e-2630.51Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN1.500e-2631.51Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_HORSP1.500e-2632.11Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_HORVU4.364e-2632.11Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_MEDSA5.699e-2631.51Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887226 ID=CV887226; Name=CV887226; organism=Citrus sinensis; type=EST; length=847bp
TAGCAGTTTTAATTTCAATGTGAAATACAGGTATCCTTAGCTACTTTTGG
TATGCTCGGTCCAATACATTCTTCTCTCTTACAATGACAGGCAAAATACA
TATTTACACCATTAAAAATGCCTACTCTTACTAAGCAGCTTGCACTTGGA
TATTCGTGTTTGCATTCGTATGTACAGATTCAGTGACTTCTTCCTCTACT
GGTAGATCATCGCCATGCAATTCGAGTTGATTGAGGTTCCGAACAAACTT
GGTGAAAGAAGGGAAATGCTCAGGTGAAAAGAAATATGCTCCCATTCTCT
GATAAGTGAACAAGTCCACTACATTCTCACCAAACAAATTTTTCTTCATT
TGCTCAAAACCGCCAGGAGCTCCTGTAACTGATGAGTTCTGCCCAGAAAC
CTCGACACCATGTTTATTGCAAGCTGTTCTGATTTGGGCAAGTAATGATT
CGGGACTTGAGAAGGACTCGCGTGGCTGGTGCTCATCTGAAAGGTCCATT
CCCGGCAAGATCATTTTGCAAGAATTCTTTGCAAACATTTCAGCAACCGC
AGCATAGCCATCTCTCTTGGCTGTGTTATAGAGGCCAGCTGTCAGTTCAG
AAGGATGAGATCGAGTTTTGTACCATGAGTGAATTAGTGGGATTTTGCCA
TATATTGACACTCCAGTTTCACCAAAAGTTGATGAGGCAAGGGAAAGAAG
GCAATTTCCATGAGAAATTAACTGACTTGAGTACCAGGAAAGGAAAAAGT
CACCATAGGGAGACTCCCAGGAACCACCATTATCCTTAAAGAAACTGTTT
GAGTTAGGTGACTCATCATAACTGGGGGCATCATGGGGACCACGAAG
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